Protein–RNA interactions for Protein: Q5SRH9

TTC39A, Tetratricopeptide repeat protein 39A, humanhuman

Predictions only

Length 613 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39AQ5SRH9 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC23.83■■□□□ 1.4
TTC39AQ5SRH9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC23.83■■□□□ 1.4
TTC39AQ5SRH9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
TTC39AQ5SRH9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 AL355355.2-201ENST00000442321 338 ntBASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.82■■□□□ 1.4
TTC39AQ5SRH9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 PCDHAC2-203ENST00000615316 3011 ntBASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TTC39AQ5SRH9 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 AP003071.4-201ENST00000562276 1284 ntBASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 AL445675.2-201ENST00000620291 557 ntBASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC23.8■■□□□ 1.4
TTC39AQ5SRH9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 HLA-A-209ENST00000638375 975 ntBASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TTC39AQ5SRH9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 NUDT16P1-203ENST00000513809 620 ntBASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
TTC39AQ5SRH9 DECR2-212ENST00000627716 352 ntTSL 2 BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms