Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.45■□□□□ 0.86
LIG3P49916 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LIG3P49916 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.45■□□□□ 0.86
LIG3P49916 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.45■□□□□ 0.86
LIG3P49916 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.45■□□□□ 0.86
LIG3P49916 AC105020.6-201ENST00000621523 1217 ntBASIC20.45■□□□□ 0.86
LIG3P49916 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.45■□□□□ 0.86
LIG3P49916 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.45■□□□□ 0.86
LIG3P49916 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
LIG3P49916 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
LIG3P49916 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.44■□□□□ 0.86
LIG3P49916 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.44■□□□□ 0.86
LIG3P49916 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.44■□□□□ 0.86
LIG3P49916 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.44■□□□□ 0.86
LIG3P49916 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 RNA5SP413-201ENST00000516373 109 ntBASIC20.44■□□□□ 0.86
LIG3P49916 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.44■□□□□ 0.86
LIG3P49916 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.44■□□□□ 0.86
LIG3P49916 TCF3P1-201ENST00000423021 1937 ntBASIC20.44■□□□□ 0.86
LIG3P49916 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
LIG3P49916 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.44■□□□□ 0.86
LIG3P49916 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.44■□□□□ 0.86
LIG3P49916 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 AC005332.7-201ENST00000614046 2005 ntBASIC20.44■□□□□ 0.86
LIG3P49916 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.44■□□□□ 0.86
LIG3P49916 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIG3P49916 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.43■□□□□ 0.86
LIG3P49916 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.43■□□□□ 0.86
LIG3P49916 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.43■□□□□ 0.86
LIG3P49916 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.43■□□□□ 0.86
LIG3P49916 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.43■□□□□ 0.86
LIG3P49916 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
LIG3P49916 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.43■□□□□ 0.86
LIG3P49916 PGM5P4-201ENST00000421970 445 ntBASIC20.43■□□□□ 0.86
LIG3P49916 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.43■□□□□ 0.86
LIG3P49916 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
LIG3P49916 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.43■□□□□ 0.86
LIG3P49916 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.43■□□□□ 0.86
LIG3P49916 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.43■□□□□ 0.86
LIG3P49916 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
LIG3P49916 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.43■□□□□ 0.86
LIG3P49916 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.43■□□□□ 0.86
LIG3P49916 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIG3P49916 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.43■□□□□ 0.86
LIG3P49916 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
LIG3P49916 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIG3P49916 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.42■□□□□ 0.86
LIG3P49916 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIG3P49916 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIG3P49916 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIG3P49916 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
LIG3P49916 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIG3P49916 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
LIG3P49916 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.42■□□□□ 0.86
LIG3P49916 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.42■□□□□ 0.86
LIG3P49916 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.42■□□□□ 0.86
LIG3P49916 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.42■□□□□ 0.86
LIG3P49916 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.42■□□□□ 0.86
LIG3P49916 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LIG3P49916 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
LIG3P49916 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.42■□□□□ 0.86
LIG3P49916 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIG3P49916 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms