Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HNF4AP41235 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HNF4AP41235 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HNF4AP41235 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HNF4AP41235 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
HNF4AP41235 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
HNF4AP41235 UNC93B4-201ENST00000505679 747 ntBASIC18.94■□□□□ 0.62
HNF4AP41235 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.94■□□□□ 0.62
HNF4AP41235 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.94■□□□□ 0.62
HNF4AP41235 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
HNF4AP41235 MIR4651-201ENST00000582622 73 ntBASIC18.94■□□□□ 0.62
HNF4AP41235 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.94■□□□□ 0.62
HNF4AP41235 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HNF4AP41235 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HNF4AP41235 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.94■□□□□ 0.62
HNF4AP41235 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.94■□□□□ 0.62
HNF4AP41235 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HNF4AP41235 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.94■□□□□ 0.62
HNF4AP41235 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HNF4AP41235 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.94■□□□□ 0.62
HNF4AP41235 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
HNF4AP41235 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HNF4AP41235 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HNF4AP41235 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HNF4AP41235 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HNF4AP41235 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
HNF4AP41235 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HNF4AP41235 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HNF4AP41235 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HNF4AP41235 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HNF4AP41235 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HNF4AP41235 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.93■□□□□ 0.62
HNF4AP41235 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
HNF4AP41235 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HNF4AP41235 AC008687.6-201ENST00000596318 630 ntBASIC18.93■□□□□ 0.62
HNF4AP41235 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.93■□□□□ 0.62
HNF4AP41235 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HNF4AP41235 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
HNF4AP41235 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HNF4AP41235 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
HNF4AP41235 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
HNF4AP41235 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
HNF4AP41235 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.92■□□□□ 0.62
HNF4AP41235 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.92■□□□□ 0.62
HNF4AP41235 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.92■□□□□ 0.62
HNF4AP41235 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 AP003097.1-201ENST00000530657 1135 ntBASIC18.92■□□□□ 0.62
HNF4AP41235 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 AL121906.2-201ENST00000621597 723 ntBASIC18.92■□□□□ 0.62
HNF4AP41235 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HNF4AP41235 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
HNF4AP41235 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.92■□□□□ 0.62
HNF4AP41235 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.92■□□□□ 0.62
HNF4AP41235 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
HNF4AP41235 AC116562.4-201ENST00000641316 2276 ntBASIC18.91■□□□□ 0.62
HNF4AP41235 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HNF4AP41235 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HNF4AP41235 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HNF4AP41235 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
HNF4AP41235 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HNF4AP41235 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
HNF4AP41235 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HNF4AP41235 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HNF4AP41235 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HNF4AP41235 ESRRAP1-201ENST00000400596 1257 ntBASIC18.91■□□□□ 0.62
HNF4AP41235 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HNF4AP41235 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.91■□□□□ 0.62
HNF4AP41235 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HNF4AP41235 AC120498.8-201ENST00000614275 531 ntBASIC18.91■□□□□ 0.62
HNF4AP41235 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.91■□□□□ 0.62
HNF4AP41235 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HNF4AP41235 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HNF4AP41235 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
HNF4AP41235 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HNF4AP41235 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
HNF4AP41235 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.91■□□□□ 0.62
HNF4AP41235 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.91■□□□□ 0.62
HNF4AP41235 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.9■□□□□ 0.62
HNF4AP41235 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 AC138932.1-201ENST00000534164 6830 ntBASIC18.9■□□□□ 0.62
HNF4AP41235 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.9■□□□□ 0.62
HNF4AP41235 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.9■□□□□ 0.62
HNF4AP41235 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms