Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CKS2P33552 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CKS2P33552 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS2P33552 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS2P33552 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CKS2P33552 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CKS2P33552 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CKS2P33552 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS2P33552 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CKS2P33552 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC14.37□□□□□ -0.11
CKS2P33552 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC14.37□□□□□ -0.11
CKS2P33552 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CKS2P33552 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CKS2P33552 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CKS2P33552 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CKS2P33552 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC14.37□□□□□ -0.11
CKS2P33552 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CKS2P33552 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC14.37□□□□□ -0.11
CKS2P33552 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC14.37□□□□□ -0.11
CKS2P33552 RARRES2P1-201ENST00000474487 481 ntBASIC14.37□□□□□ -0.11
CKS2P33552 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC14.37□□□□□ -0.11
CKS2P33552 GRAMD4P7-201ENST00000578182 1232 ntBASIC14.37□□□□□ -0.11
CKS2P33552 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CKS2P33552 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CKS2P33552 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC14.37□□□□□ -0.11
CKS2P33552 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CKS2P33552 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC14.37□□□□□ -0.11
CKS2P33552 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CKS2P33552 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC14.37□□□□□ -0.11
CKS2P33552 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CKS2P33552 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CKS2P33552 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CKS2P33552 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 COMP-202ENST00000425807 2292 ntTSL 2 BASIC14.36□□□□□ -0.11
CKS2P33552 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC14.36□□□□□ -0.11
CKS2P33552 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
CKS2P33552 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC14.36□□□□□ -0.11
CKS2P33552 OR2A1-AS1-204ENST00000470435 602 ntBASIC14.36□□□□□ -0.11
CKS2P33552 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CKS2P33552 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CKS2P33552 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC14.36□□□□□ -0.11
CKS2P33552 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 FER1L4-210ENST00000615531 5998 ntBASIC14.36□□□□□ -0.11
CKS2P33552 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CKS2P33552 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.36□□□□□ -0.11
CKS2P33552 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CKS2P33552 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS2P33552 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CKS2P33552 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CKS2P33552 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS2P33552 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS2P33552 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC14.35□□□□□ -0.11
CKS2P33552 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS2P33552 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CKS2P33552 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS2P33552 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS2P33552 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC14.35□□□□□ -0.11
CKS2P33552 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CKS2P33552 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CKS2P33552 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms