Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.56■□□□□ 0.24
USF1P22415 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC16.55■□□□□ 0.24
USF1P22415 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USF1P22415 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USF1P22415 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
USF1P22415 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
USF1P22415 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
USF1P22415 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.55■□□□□ 0.24
USF1P22415 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.55■□□□□ 0.24
USF1P22415 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.55■□□□□ 0.24
USF1P22415 MIR1238-201ENST00000408483 83 ntBASIC16.55■□□□□ 0.24
USF1P22415 AP000525.1-201ENST00000608286 694 ntBASIC16.55■□□□□ 0.24
USF1P22415 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
USF1P22415 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
USF1P22415 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USF1P22415 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.55■□□□□ 0.24
USF1P22415 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC16.55■□□□□ 0.24
USF1P22415 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
USF1P22415 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.55■□□□□ 0.24
USF1P22415 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USF1P22415 PTBP1P-201ENST00000554374 1601 ntBASIC16.55■□□□□ 0.24
USF1P22415 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
USF1P22415 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.55■□□□□ 0.24
USF1P22415 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
USF1P22415 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 AC079598.2-202ENST00000546624 1451 ntBASIC16.54■□□□□ 0.24
USF1P22415 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.54■□□□□ 0.24
USF1P22415 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 NIFKP9-201ENST00000419265 221 ntBASIC16.54■□□□□ 0.24
USF1P22415 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.54■□□□□ 0.24
USF1P22415 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.54■□□□□ 0.24
USF1P22415 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.54■□□□□ 0.24
USF1P22415 AC092865.7-201ENST00000641832 219 ntBASIC16.54■□□□□ 0.24
USF1P22415 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
USF1P22415 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.54■□□□□ 0.24
USF1P22415 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 KRT16P1-201ENST00000399124 1418 ntBASIC16.53■□□□□ 0.24
USF1P22415 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.53■□□□□ 0.24
USF1P22415 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.53■□□□□ 0.24
USF1P22415 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.53■□□□□ 0.24
USF1P22415 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
USF1P22415 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.53■□□□□ 0.24
USF1P22415 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.53■□□□□ 0.24
USF1P22415 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.53■□□□□ 0.24
USF1P22415 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.53■□□□□ 0.24
USF1P22415 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.53■□□□□ 0.24
USF1P22415 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.53■□□□□ 0.24
USF1P22415 NAPSB-206ENST00000562112 1266 ntBASIC16.53■□□□□ 0.24
USF1P22415 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
USF1P22415 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
USF1P22415 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.53■□□□□ 0.24
USF1P22415 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.53■□□□□ 0.24
USF1P22415 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
USF1P22415 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.53■□□□□ 0.24
USF1P22415 AC073314.1-201ENST00000568729 2216 ntBASIC16.53■□□□□ 0.24
USF1P22415 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
USF1P22415 KRT8P17-201ENST00000453110 1448 ntBASIC16.53■□□□□ 0.24
USF1P22415 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.53■□□□□ 0.24
USF1P22415 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.52■□□□□ 0.24
USF1P22415 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
USF1P22415 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.52■□□□□ 0.24
USF1P22415 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
USF1P22415 FP700111.2-201ENST00000619190 1892 ntBASIC16.52■□□□□ 0.24
USF1P22415 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
USF1P22415 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
USF1P22415 LINC01568-207ENST00000641790 1380 ntBASIC16.52■□□□□ 0.24
USF1P22415 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.52■□□□□ 0.24
USF1P22415 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
USF1P22415 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.52■□□□□ 0.24
USF1P22415 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
USF1P22415 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
USF1P22415 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
USF1P22415 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms