Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.45■□□□□ 0.7
MSH3P20585 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.45■□□□□ 0.7
MSH3P20585 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.45■□□□□ 0.7
MSH3P20585 FAM197Y4-202ENST00000622692 608 ntBASIC19.45■□□□□ 0.7
MSH3P20585 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.45■□□□□ 0.7
MSH3P20585 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
MSH3P20585 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.45■□□□□ 0.7
MSH3P20585 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
MSH3P20585 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH3P20585 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
MSH3P20585 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.44■□□□□ 0.7
MSH3P20585 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH3P20585 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
MSH3P20585 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.44■□□□□ 0.7
MSH3P20585 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH3P20585 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSH3P20585 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.44■□□□□ 0.7
MSH3P20585 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
MSH3P20585 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
MSH3P20585 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH3P20585 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
MSH3P20585 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSH3P20585 RPPH1-201ENST00000516869 333 ntBASIC19.44■□□□□ 0.7
MSH3P20585 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.44■□□□□ 0.7
MSH3P20585 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.44■□□□□ 0.7
MSH3P20585 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH3P20585 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
MSH3P20585 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.44■□□□□ 0.7
MSH3P20585 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.44■□□□□ 0.7
MSH3P20585 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.44■□□□□ 0.7
MSH3P20585 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH3P20585 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSH3P20585 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSH3P20585 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
MSH3P20585 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.43■□□□□ 0.7
MSH3P20585 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSH3P20585 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH3P20585 YBX1P10-201ENST00000444752 975 ntBASIC19.43■□□□□ 0.7
MSH3P20585 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
MSH3P20585 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.43■□□□□ 0.7
MSH3P20585 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.43■□□□□ 0.7
MSH3P20585 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
MSH3P20585 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSH3P20585 AC142381.4-202ENST00000563973 229 ntBASIC19.43■□□□□ 0.7
MSH3P20585 AC124016.1-201ENST00000609552 612 ntBASIC19.43■□□□□ 0.7
MSH3P20585 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
MSH3P20585 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
MSH3P20585 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.43■□□□□ 0.7
MSH3P20585 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH3P20585 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.43■□□□□ 0.7
MSH3P20585 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.43■□□□□ 0.7
MSH3P20585 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
MSH3P20585 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.43■□□□□ 0.7
MSH3P20585 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.43■□□□□ 0.7
MSH3P20585 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
MSH3P20585 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH3P20585 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
MSH3P20585 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH3P20585 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.42■□□□□ 0.7
MSH3P20585 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.42■□□□□ 0.7
MSH3P20585 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH3P20585 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH3P20585 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.42■□□□□ 0.7
MSH3P20585 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH3P20585 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
MSH3P20585 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
MSH3P20585 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
MSH3P20585 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH3P20585 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.42■□□□□ 0.7
MSH3P20585 AC133681.1-201ENST00000465482 601 ntBASIC19.42■□□□□ 0.7
MSH3P20585 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.42■□□□□ 0.7
MSH3P20585 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
MSH3P20585 AC004264.1-201ENST00000608354 794 ntBASIC19.42■□□□□ 0.7
MSH3P20585 AC110285.5-201ENST00000611501 352 ntBASIC19.42■□□□□ 0.7
MSH3P20585 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.42■□□□□ 0.7
MSH3P20585 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH3P20585 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.42■□□□□ 0.7
MSH3P20585 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
MSH3P20585 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH3P20585 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.42■□□□□ 0.7
MSH3P20585 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
MSH3P20585 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH3P20585 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH3P20585 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.42■□□□□ 0.7
MSH3P20585 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.42■□□□□ 0.7
MSH3P20585 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms