Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
TNFP01375 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.12■□□□□ 0.65
TNFP01375 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TNFP01375 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.12■□□□□ 0.65
TNFP01375 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TNFP01375 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.11■□□□□ 0.65
TNFP01375 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TNFP01375 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.11■□□□□ 0.65
TNFP01375 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.11■□□□□ 0.65
TNFP01375 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
TNFP01375 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.11■□□□□ 0.65
TNFP01375 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TNFP01375 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.11■□□□□ 0.65
TNFP01375 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
TNFP01375 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
TNFP01375 AC004951.3-201ENST00000418645 1148 ntBASIC19.11■□□□□ 0.65
TNFP01375 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.11■□□□□ 0.65
TNFP01375 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TNFP01375 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TNFP01375 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.11■□□□□ 0.65
TNFP01375 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
TNFP01375 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.11■□□□□ 0.65
TNFP01375 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.11■□□□□ 0.65
TNFP01375 AC011298.2-201ENST00000617989 482 ntBASIC19.11■□□□□ 0.65
TNFP01375 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TNFP01375 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TNFP01375 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TNFP01375 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TNFP01375 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
TNFP01375 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TNFP01375 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TNFP01375 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.1■□□□□ 0.65
TNFP01375 CYP2D8P-201ENST00000433633 1490 ntBASIC19.1■□□□□ 0.65
TNFP01375 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
TNFP01375 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TNFP01375 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
TNFP01375 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TNFP01375 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.1■□□□□ 0.65
TNFP01375 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.1■□□□□ 0.65
TNFP01375 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.1■□□□□ 0.65
TNFP01375 AC005363.2-201ENST00000618631 242 ntBASIC19.1■□□□□ 0.65
TNFP01375 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.1■□□□□ 0.65
TNFP01375 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TNFP01375 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
TNFP01375 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TNFP01375 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
TNFP01375 RCC2P6-201ENST00000526625 1557 ntBASIC19.1■□□□□ 0.65
TNFP01375 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TNFP01375 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TNFP01375 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.09■□□□□ 0.65
TNFP01375 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFP01375 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFP01375 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFP01375 KRT18P22-201ENST00000402024 1347 ntBASIC19.09■□□□□ 0.65
TNFP01375 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFP01375 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFP01375 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TNFP01375 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TNFP01375 MIR1224-201ENST00000408193 85 ntBASIC19.09■□□□□ 0.65
TNFP01375 CRYGFP-201ENST00000418459 633 ntBASIC19.09■□□□□ 0.65
TNFP01375 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.09■□□□□ 0.65
TNFP01375 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.09■□□□□ 0.65
TNFP01375 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFP01375 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFP01375 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.09■□□□□ 0.65
TNFP01375 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFP01375 SLC25A1P4-201ENST00000567977 778 ntBASIC19.09■□□□□ 0.65
TNFP01375 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFP01375 AP005242.2-201ENST00000580065 1175 ntBASIC19.09■□□□□ 0.65
TNFP01375 AP000692.2-201ENST00000608391 879 ntBASIC19.09■□□□□ 0.65
TNFP01375 AC010947.1-201ENST00000623454 693 ntBASIC19.09■□□□□ 0.65
TNFP01375 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TNFP01375 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
TNFP01375 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFP01375 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TNFP01375 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TNFP01375 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TNFP01375 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TNFP01375 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TNFP01375 AL391422.3-201ENST00000603791 2761 ntBASIC19.08■□□□□ 0.65
TNFP01375 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TNFP01375 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
TNFP01375 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.08■□□□□ 0.64
TNFP01375 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.08■□□□□ 0.64
TNFP01375 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.08■□□□□ 0.64
TNFP01375 RCN1P1-201ENST00000400413 996 ntBASIC19.08■□□□□ 0.64
TNFP01375 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.08■□□□□ 0.64
TNFP01375 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.08■□□□□ 0.64
TNFP01375 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.08■□□□□ 0.64
TNFP01375 C2orf69P3-201ENST00000565542 1120 ntBASIC19.08■□□□□ 0.64
TNFP01375 AL160286.2-201ENST00000567150 934 ntBASIC19.08■□□□□ 0.64
TNFP01375 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
TNFP01375 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TNFP01375 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TNFP01375 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
TNFP01375 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.07■□□□□ 0.64
TNFP01375 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TNFP01375 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TNFP01375 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
TNFP01375 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms