Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA1O95477 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.36■□□□□ 0.21
ABCA1O95477 AC063952.2-201ENST00000498792 1227 ntBASIC16.36■□□□□ 0.21
ABCA1O95477 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.36■□□□□ 0.21
ABCA1O95477 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
ABCA1O95477 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.36■□□□□ 0.21
ABCA1O95477 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 LINC01006-201ENST00000333319 2292 ntBASIC16.36■□□□□ 0.21
ABCA1O95477 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.36■□□□□ 0.21
ABCA1O95477 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
ABCA1O95477 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
ABCA1O95477 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.36■□□□□ 0.21
ABCA1O95477 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.36■□□□□ 0.21
ABCA1O95477 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ABCA1O95477 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC16.36■□□□□ 0.21
ABCA1O95477 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.35■□□□□ 0.21
ABCA1O95477 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ABCA1O95477 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ABCA1O95477 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
ABCA1O95477 AC097488.1-201ENST00000507834 756 ntBASIC16.35■□□□□ 0.21
ABCA1O95477 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.35■□□□□ 0.21
ABCA1O95477 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.35■□□□□ 0.21
ABCA1O95477 AC006011.2-201ENST00000621313 1158 ntBASIC16.35■□□□□ 0.21
ABCA1O95477 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
ABCA1O95477 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ABCA1O95477 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.35■□□□□ 0.21
ABCA1O95477 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ABCA1O95477 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
ABCA1O95477 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ABCA1O95477 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC16.35■□□□□ 0.21
ABCA1O95477 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.35■□□□□ 0.21
ABCA1O95477 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
ABCA1O95477 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ABCA1O95477 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.35■□□□□ 0.21
ABCA1O95477 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
ABCA1O95477 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
ABCA1O95477 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
ABCA1O95477 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
ABCA1O95477 FSCN1P1-201ENST00000568912 1481 ntBASIC16.35■□□□□ 0.21
ABCA1O95477 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
ABCA1O95477 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.34■□□□□ 0.21
ABCA1O95477 ATP5G1P1-201ENST00000448724 379 ntBASIC16.34■□□□□ 0.21
ABCA1O95477 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.34■□□□□ 0.21
ABCA1O95477 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.34■□□□□ 0.21
ABCA1O95477 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.34■□□□□ 0.21
ABCA1O95477 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.34■□□□□ 0.21
ABCA1O95477 LINC01238-205ENST00000567549 1107 ntBASIC16.34■□□□□ 0.21
ABCA1O95477 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.34■□□□□ 0.21
ABCA1O95477 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
ABCA1O95477 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 AL121603.2-201ENST00000557373 2117 ntBASIC16.34■□□□□ 0.21
ABCA1O95477 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.34■□□□□ 0.21
ABCA1O95477 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.34■□□□□ 0.21
ABCA1O95477 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.34■□□□□ 0.21
ABCA1O95477 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.34■□□□□ 0.21
ABCA1O95477 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.34■□□□□ 0.21
ABCA1O95477 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.34■□□□□ 0.21
ABCA1O95477 MYC-208ENST00000641036 567 ntBASIC16.34■□□□□ 0.21
ABCA1O95477 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
ABCA1O95477 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA1O95477 AC020763.4-201ENST00000623414 4170 ntBASIC16.34■□□□□ 0.21
ABCA1O95477 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
ABCA1O95477 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC16.34■□□□□ 0.21
ABCA1O95477 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
ABCA1O95477 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.33■□□□□ 0.21
ABCA1O95477 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
ABCA1O95477 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.33■□□□□ 0.21
ABCA1O95477 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC16.33■□□□□ 0.21
ABCA1O95477 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.33■□□□□ 0.2
ABCA1O95477 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
ABCA1O95477 DUSP5P1-201ENST00000441325 1139 ntBASIC16.33■□□□□ 0.2
ABCA1O95477 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.33■□□□□ 0.2
ABCA1O95477 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA1O95477 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.33■□□□□ 0.2
ABCA1O95477 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA1O95477 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA1O95477 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms