Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC3O75056 AC008040.2-201ENST00000461049 708 ntBASIC19.13■□□□□ 0.65
SDC3O75056 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.13■□□□□ 0.65
SDC3O75056 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.13■□□□□ 0.65
SDC3O75056 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.13■□□□□ 0.65
SDC3O75056 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.13■□□□□ 0.65
SDC3O75056 AC006011.2-201ENST00000621313 1158 ntBASIC19.13■□□□□ 0.65
SDC3O75056 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.13■□□□□ 0.65
SDC3O75056 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SDC3O75056 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC3O75056 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SDC3O75056 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SDC3O75056 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC3O75056 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
SDC3O75056 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC3O75056 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SDC3O75056 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SDC3O75056 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SDC3O75056 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SDC3O75056 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDC3O75056 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDC3O75056 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDC3O75056 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
SDC3O75056 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDC3O75056 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDC3O75056 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.12■□□□□ 0.65
SDC3O75056 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDC3O75056 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SDC3O75056 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
SDC3O75056 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDC3O75056 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDC3O75056 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.12■□□□□ 0.65
SDC3O75056 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.12■□□□□ 0.65
SDC3O75056 WWOX-216ENST00000569818 525 ntBASIC19.12■□□□□ 0.65
SDC3O75056 AC087388.1-201ENST00000571370 1112 ntBASIC19.12■□□□□ 0.65
SDC3O75056 AC130371.2-201ENST00000619443 611 ntBASIC19.12■□□□□ 0.65
SDC3O75056 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SDC3O75056 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.11■□□□□ 0.65
SDC3O75056 TMEM179-206ENST00000616017 1645 ntBASIC19.11■□□□□ 0.65
SDC3O75056 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.11■□□□□ 0.65
SDC3O75056 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.11■□□□□ 0.65
SDC3O75056 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SDC3O75056 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.11■□□□□ 0.65
SDC3O75056 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 AC128688.1-201ENST00000487626 519 ntBASIC19.11■□□□□ 0.65
SDC3O75056 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.11■□□□□ 0.65
SDC3O75056 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SDC3O75056 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
SDC3O75056 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.11■□□□□ 0.65
SDC3O75056 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SDC3O75056 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.11■□□□□ 0.65
SDC3O75056 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SDC3O75056 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SDC3O75056 AC004951.3-201ENST00000418645 1148 ntBASIC19.1■□□□□ 0.65
SDC3O75056 MFAP1P1-201ENST00000442257 1255 ntBASIC19.1■□□□□ 0.65
SDC3O75056 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 AP000692.2-201ENST00000608391 879 ntBASIC19.1■□□□□ 0.65
SDC3O75056 FAM87A-204ENST00000613235 858 ntBASIC19.1■□□□□ 0.65
SDC3O75056 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SDC3O75056 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SDC3O75056 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.1■□□□□ 0.65
SDC3O75056 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.09■□□□□ 0.65
SDC3O75056 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.09■□□□□ 0.65
SDC3O75056 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.09■□□□□ 0.65
SDC3O75056 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SDC3O75056 AIRN-201ENST00000601203 4374 ntBASIC19.09■□□□□ 0.65
SDC3O75056 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.09■□□□□ 0.65
SDC3O75056 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.09■□□□□ 0.65
SDC3O75056 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms