Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC15.72■□□□□ 0.11
HMGB3O15347 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
HMGB3O15347 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC15.72■□□□□ 0.11
HMGB3O15347 AC018470.1-201ENST00000624790 3129 ntBASIC15.72■□□□□ 0.11
HMGB3O15347 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC15.72■□□□□ 0.11
HMGB3O15347 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
HMGB3O15347 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.72■□□□□ 0.11
HMGB3O15347 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HMGB3O15347 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
HMGB3O15347 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HMGB3O15347 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
HMGB3O15347 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
HMGB3O15347 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC15.71■□□□□ 0.11
HMGB3O15347 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC15.71■□□□□ 0.11
HMGB3O15347 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC15.71■□□□□ 0.11
HMGB3O15347 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC15.71■□□□□ 0.11
HMGB3O15347 SRR-208ENST00000576848 588 ntTSL 4 BASIC15.71■□□□□ 0.11
HMGB3O15347 AC126544.1-201ENST00000580842 1059 ntBASIC15.71■□□□□ 0.11
HMGB3O15347 AC053503.5-201ENST00000601508 636 ntBASIC15.71■□□□□ 0.11
HMGB3O15347 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC15.71■□□□□ 0.11
HMGB3O15347 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.71■□□□□ 0.11
HMGB3O15347 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
HMGB3O15347 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HMGB3O15347 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
HMGB3O15347 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB3O15347 ADK-206ENST00000541550 2222 ntTSL 2 BASIC15.71■□□□□ 0.1
HMGB3O15347 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC15.71■□□□□ 0.1
HMGB3O15347 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB3O15347 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB3O15347 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB3O15347 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HMGB3O15347 BX119927.1-201ENST00000636596 1552 ntBASIC15.7■□□□□ 0.1
HMGB3O15347 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC15.7■□□□□ 0.1
HMGB3O15347 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
HMGB3O15347 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC15.7■□□□□ 0.1
HMGB3O15347 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
HMGB3O15347 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HMGB3O15347 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
HMGB3O15347 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 PTMA-205ENST00000410064 814 ntTSL 2 BASIC15.7■□□□□ 0.1
HMGB3O15347 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC15.7■□□□□ 0.1
HMGB3O15347 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC15.7■□□□□ 0.1
HMGB3O15347 EEF1DP3-203ENST00000566025 782 ntBASIC15.7■□□□□ 0.1
HMGB3O15347 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC15.7■□□□□ 0.1
HMGB3O15347 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HMGB3O15347 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
HMGB3O15347 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HMGB3O15347 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HMGB3O15347 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.69■□□□□ 0.1
HMGB3O15347 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HMGB3O15347 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
HMGB3O15347 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HMGB3O15347 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HMGB3O15347 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HMGB3O15347 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC15.69■□□□□ 0.1
HMGB3O15347 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC15.69■□□□□ 0.1
HMGB3O15347 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC15.69■□□□□ 0.1
HMGB3O15347 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
HMGB3O15347 RARRES2P11-201ENST00000635158 484 ntBASIC15.69■□□□□ 0.1
HMGB3O15347 AC105233.4-201ENST00000642045 216 ntBASIC15.69■□□□□ 0.1
HMGB3O15347 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HMGB3O15347 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
HMGB3O15347 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms