Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.91■□□□□ 0.62
CDX4O14627 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.91■□□□□ 0.62
CDX4O14627 CKBP1-201ENST00000565489 1086 ntBASIC18.91■□□□□ 0.62
CDX4O14627 AL160286.2-201ENST00000567150 934 ntBASIC18.91■□□□□ 0.62
CDX4O14627 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 AC092119.3-201ENST00000612618 583 ntBASIC18.91■□□□□ 0.62
CDX4O14627 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.9■□□□□ 0.62
CDX4O14627 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CDX4O14627 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.9■□□□□ 0.62
CDX4O14627 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CDX4O14627 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX4O14627 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.9■□□□□ 0.62
CDX4O14627 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX4O14627 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX4O14627 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX4O14627 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CDX4O14627 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CDX4O14627 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.9■□□□□ 0.62
CDX4O14627 SPDYE13P-201ENST00000445314 798 ntBASIC18.9■□□□□ 0.62
CDX4O14627 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.9■□□□□ 0.62
CDX4O14627 GCSHP2-201ENST00000560971 527 ntBASIC18.9■□□□□ 0.62
CDX4O14627 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.9■□□□□ 0.62
CDX4O14627 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.9■□□□□ 0.62
CDX4O14627 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CDX4O14627 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CDX4O14627 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX4O14627 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.9■□□□□ 0.62
CDX4O14627 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX4O14627 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.9■□□□□ 0.62
CDX4O14627 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX4O14627 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.9■□□□□ 0.62
CDX4O14627 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX4O14627 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
CDX4O14627 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CDX4O14627 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CDX4O14627 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CDX4O14627 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CDX4O14627 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.89■□□□□ 0.61
CDX4O14627 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.89■□□□□ 0.61
CDX4O14627 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.89■□□□□ 0.61
CDX4O14627 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.89■□□□□ 0.61
CDX4O14627 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.89■□□□□ 0.61
CDX4O14627 NEK4P2-201ENST00000580004 1012 ntBASIC18.89■□□□□ 0.61
CDX4O14627 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CDX4O14627 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDX4O14627 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.88■□□□□ 0.61
CDX4O14627 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
CDX4O14627 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
CDX4O14627 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.88■□□□□ 0.61
CDX4O14627 AL845331.1-201ENST00000424978 1190 ntBASIC18.88■□□□□ 0.61
CDX4O14627 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.88■□□□□ 0.61
CDX4O14627 MIR3652-201ENST00000579335 131 ntBASIC18.88■□□□□ 0.61
CDX4O14627 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.88■□□□□ 0.61
CDX4O14627 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CDX4O14627 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CDX4O14627 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CDX4O14627 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX4O14627 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX4O14627 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX4O14627 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX4O14627 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX4O14627 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX4O14627 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.87■□□□□ 0.61
CDX4O14627 SPDYE15P-201ENST00000424157 909 ntBASIC18.87■□□□□ 0.61
CDX4O14627 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
CDX4O14627 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDX4O14627 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CDX4O14627 PRELID1P1-202ENST00000567272 903 ntBASIC18.87■□□□□ 0.61
CDX4O14627 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CDX4O14627 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms