Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.81■□□□□ 0.6
SLC28A1O00337 MIPEPP3-201ENST00000412105 444 ntBASIC18.81■□□□□ 0.6
SLC28A1O00337 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.81■□□□□ 0.6
SLC28A1O00337 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.81■□□□□ 0.6
SLC28A1O00337 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.81■□□□□ 0.6
SLC28A1O00337 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.81■□□□□ 0.6
SLC28A1O00337 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SLC28A1O00337 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC28A1O00337 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC28A1O00337 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.81■□□□□ 0.6
SLC28A1O00337 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.81■□□□□ 0.6
SLC28A1O00337 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.81■□□□□ 0.6
SLC28A1O00337 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC28A1O00337 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SLC28A1O00337 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SLC28A1O00337 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
SLC28A1O00337 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SLC28A1O00337 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SLC28A1O00337 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC28A1O00337 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SLC28A1O00337 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SLC28A1O00337 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SLC28A1O00337 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SLC28A1O00337 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SLC28A1O00337 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.81■□□□□ 0.6
SLC28A1O00337 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SLC28A1O00337 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC28A1O00337 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC28A1O00337 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SLC28A1O00337 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.8■□□□□ 0.6
SLC28A1O00337 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC28A1O00337 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC28A1O00337 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SLC28A1O00337 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC28A1O00337 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.8■□□□□ 0.6
SLC28A1O00337 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.8■□□□□ 0.6
SLC28A1O00337 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.8■□□□□ 0.6
SLC28A1O00337 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.8■□□□□ 0.6
SLC28A1O00337 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.8■□□□□ 0.6
SLC28A1O00337 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.8■□□□□ 0.6
SLC28A1O00337 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.8■□□□□ 0.6
SLC28A1O00337 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.8■□□□□ 0.6
SLC28A1O00337 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SLC28A1O00337 AL020996.1-203ENST00000536896 2307 ntBASIC18.8■□□□□ 0.6
SLC28A1O00337 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SLC28A1O00337 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.8■□□□□ 0.6
SLC28A1O00337 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SLC28A1O00337 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.8■□□□□ 0.6
SLC28A1O00337 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SLC28A1O00337 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.79■□□□□ 0.6
SLC28A1O00337 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SLC28A1O00337 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.79■□□□□ 0.6
SLC28A1O00337 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 CROCCP5-201ENST00000436658 830 ntBASIC18.79■□□□□ 0.6
SLC28A1O00337 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SLC28A1O00337 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SLC28A1O00337 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.79■□□□□ 0.6
SLC28A1O00337 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.79■□□□□ 0.6
SLC28A1O00337 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.79■□□□□ 0.6
SLC28A1O00337 RAP2CP1-201ENST00000605103 478 ntBASIC18.79■□□□□ 0.6
SLC28A1O00337 AL121832.2-201ENST00000610979 668 ntBASIC18.79■□□□□ 0.6
SLC28A1O00337 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SLC28A1O00337 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SLC28A1O00337 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SLC28A1O00337 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.78■□□□□ 0.6
SLC28A1O00337 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 AC120498.9-201ENST00000339021 3867 ntBASIC18.78■□□□□ 0.6
SLC28A1O00337 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SLC28A1O00337 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.78■□□□□ 0.6
SLC28A1O00337 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.78■□□□□ 0.6
SLC28A1O00337 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.78■□□□□ 0.6
SLC28A1O00337 DUSP5P2-201ENST00000426873 1033 ntBASIC18.78■□□□□ 0.6
SLC28A1O00337 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.78■□□□□ 0.6
SLC28A1O00337 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.78■□□□□ 0.6
SLC28A1O00337 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
SLC28A1O00337 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SLC28A1O00337 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SLC28A1O00337 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms