Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AP001271.2-201ENST00000624018 1556 ntBASIC34.06■■■■□ 3.04
CCDC88BA6NC98 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC34.06■■■■□ 3.04
CCDC88BA6NC98 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 AL671277.2-201ENST00000458060 996 ntBASIC34.05■■■■□ 3.04
CCDC88BA6NC98 ETFA-216ENST00000560726 942 ntTSL 3 BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
CCDC88BA6NC98 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 CD81-212ENST00000526072 1172 ntTSL 5 BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC34.04■■■■□ 3.04
CCDC88BA6NC98 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC34.03■■■■□ 3.04
CCDC88BA6NC98 IER3-202ENST00000376377 1350 ntBASIC34.03■■■■□ 3.04
CCDC88BA6NC98 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
CCDC88BA6NC98 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC34.03■■■■□ 3.04
CCDC88BA6NC98 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC34.03■■■■□ 3.04
CCDC88BA6NC98 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC34.03■■■■□ 3.04
CCDC88BA6NC98 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC34.03■■■■□ 3.04
CCDC88BA6NC98 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
CCDC88BA6NC98 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC34.03■■■■□ 3.04
CCDC88BA6NC98 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
CCDC88BA6NC98 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC34.02■■■■□ 3.04
CCDC88BA6NC98 HOMER2P1-201ENST00000455653 964 ntBASIC34.02■■■■□ 3.04
CCDC88BA6NC98 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC34.02■■■■□ 3.04
CCDC88BA6NC98 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC34.02■■■■□ 3.04
CCDC88BA6NC98 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC34.02■■■■□ 3.04
CCDC88BA6NC98 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC34.02■■■■□ 3.04
CCDC88BA6NC98 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC34.02■■■■□ 3.04
CCDC88BA6NC98 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC34.02■■■■□ 3.04
CCDC88BA6NC98 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC34.02■■■■□ 3.04
CCDC88BA6NC98 KRT8P45-201ENST00000414328 1447 ntBASIC34.02■■■■□ 3.04
CCDC88BA6NC98 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
CCDC88BA6NC98 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC34.02■■■■□ 3.04
CCDC88BA6NC98 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 CD37-204ENST00000535669 1674 ntTSL 2 BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
CCDC88BA6NC98 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC34.01■■■■□ 3.03
CCDC88BA6NC98 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC34.01■■■■□ 3.03
CCDC88BA6NC98 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.03
CCDC88BA6NC98 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC34■■■■□ 3.03
CCDC88BA6NC98 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC34■■■■□ 3.03
CCDC88BA6NC98 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC34■■■■□ 3.03
CCDC88BA6NC98 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC34■■■■□ 3.03
CCDC88BA6NC98 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC34■■■■□ 3.03
CCDC88BA6NC98 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC34■■■■□ 3.03
CCDC88BA6NC98 KRT126P-201ENST00000549467 1181 ntBASIC34■■■■□ 3.03
CCDC88BA6NC98 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC34■■■■□ 3.03
CCDC88BA6NC98 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC34■■■■□ 3.03
CCDC88BA6NC98 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC34■■■■□ 3.03
CCDC88BA6NC98 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
CCDC88BA6NC98 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC34■■■■□ 3.03
CCDC88BA6NC98 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 DFFB-212ENST00000625756 649 ntTSL 5 BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC33.99■■■■□ 3.03
CCDC88BA6NC98 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
CCDC88BA6NC98 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC33.98■■■■□ 3.03
CCDC88BA6NC98 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
CCDC88BA6NC98 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
CCDC88BA6NC98 KRT18P48-201ENST00000434763 852 ntBASIC33.98■■■■□ 3.03
CCDC88BA6NC98 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC33.98■■■■□ 3.03
CCDC88BA6NC98 NT5C-210ENST00000582160 860 ntTSL 2 BASIC33.98■■■■□ 3.03
CCDC88BA6NC98 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
CCDC88BA6NC98 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
CCDC88BA6NC98 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
CCDC88BA6NC98 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC33.98■■■■□ 3.03
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms