Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SMAD5-AS1-201ENST00000297163 1816 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 CKAP2P1-201ENST00000555477 2049 ntBASIC6.9□□□□□ -1.3
MSX1P28360 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
MSX1P28360 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 Y_RNA.202-201ENST00000364083 110 ntBASIC6.9□□□□□ -1.3
MSX1P28360 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 RNU6-98P-201ENST00000384173 107 ntBASIC6.9□□□□□ -1.3
MSX1P28360 RNA5SP105-201ENST00000391123 113 ntBASIC6.9□□□□□ -1.3
MSX1P28360 HMGB3P1-201ENST00000393368 573 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AL355375.1-201ENST00000405686 392 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC6.9□□□□□ -1.3
MSX1P28360 RAC1P4-201ENST00000419413 579 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC6.9□□□□□ -1.3
MSX1P28360 PCBP2P1-201ENST00000437262 977 ntBASIC6.9□□□□□ -1.3
MSX1P28360 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
MSX1P28360 AC006480.1-201ENST00000449887 378 ntBASIC6.9□□□□□ -1.3
MSX1P28360 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.9□□□□□ -1.3
MSX1P28360 AL590639.1-201ENST00000456484 337 ntBASIC6.9□□□□□ -1.3
MSX1P28360 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.9□□□□□ -1.3
MSX1P28360 AC005550.2-201ENST00000476382 318 ntBASIC6.9□□□□□ -1.3
MSX1P28360 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC6.9□□□□□ -1.3
MSX1P28360 MTND1P3-201ENST00000484956 952 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AC104687.1-201ENST00000485829 412 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AC111193.1-201ENST00000504097 155 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6.9□□□□□ -1.3
MSX1P28360 AC017037.1-201ENST00000508460 471 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC6.9□□□□□ -1.3
MSX1P28360 RNU6-885P-201ENST00000516607 104 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AC008429.2-201ENST00000523057 864 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC6.9□□□□□ -1.3
MSX1P28360 ELOCP31-201ENST00000540463 467 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC6.9□□□□□ -1.3
MSX1P28360 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
MSX1P28360 DPPA3P2-201ENST00000553589 478 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AL049869.4-201ENST00000555669 178 ntBASIC6.9□□□□□ -1.3
MSX1P28360 MRPS21P9-201ENST00000571150 257 ntBASIC6.9□□□□□ -1.3
MSX1P28360 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.9□□□□□ -1.3
MSX1P28360 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC6.9□□□□□ -1.3
MSX1P28360 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC6.9□□□□□ -1.3
MSX1P28360 AL022238.3-201ENST00000609279 443 ntBASIC6.9□□□□□ -1.3
MSX1P28360 MIAT_exon1.1-201ENST00000617016 135 ntBASIC6.9□□□□□ -1.3
MSX1P28360 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC6.9□□□□□ -1.3
MSX1P28360 AC103564.3-201ENST00000621194 220 ntBASIC6.9□□□□□ -1.3
MSX1P28360 C2orf27A-204ENST00000623058 969 ntBASIC6.9□□□□□ -1.3
MSX1P28360 GAS2-210ENST00000630668 674 ntTSL 5 BASIC6.9□□□□□ -1.3
MSX1P28360 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.3
MSX1P28360 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.3
MSX1P28360 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC6.9□□□□□ -1.31
MSX1P28360 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC6.9□□□□□ -1.31
MSX1P28360 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC6.9□□□□□ -1.31
MSX1P28360 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
MSX1P28360 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
MSX1P28360 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
MSX1P28360 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
MSX1P28360 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.31
MSX1P28360 AL118496.1-201ENST00000440201 1812 ntBASIC6.9□□□□□ -1.31
MSX1P28360 PRKCQ-204ENST00000610727 3077 ntTSL 5 BASIC6.9□□□□□ -1.31
MSX1P28360 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC6.9□□□□□ -1.31
MSX1P28360 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
MSX1P28360 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC6.89□□□□□ -1.31
MSX1P28360 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 SELENOP-203ENST00000506577 2204 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 EPHA4-203ENST00000409938 3363 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
MSX1P28360 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 GAPDHP24-201ENST00000328713 983 ntBASIC6.89□□□□□ -1.31
MSX1P28360 RNU1-16P-201ENST00000365477 164 ntBASIC6.89□□□□□ -1.31
MSX1P28360 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
MSX1P28360 MIR27A-201ENST00000385073 78 ntBASIC6.89□□□□□ -1.31
MSX1P28360 PRELID1P2-201ENST00000407805 396 ntBASIC6.89□□□□□ -1.31
MSX1P28360 RN7SKP29-201ENST00000410957 272 ntBASIC6.89□□□□□ -1.31
MSX1P28360 AC004986.1-201ENST00000414855 607 ntBASIC6.89□□□□□ -1.31
MSX1P28360 RPL34P19-201ENST00000415903 342 ntBASIC6.89□□□□□ -1.31
MSX1P28360 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 SNX18P3-201ENST00000424993 835 ntBASIC6.89□□□□□ -1.31
MSX1P28360 MTCO3P46-201ENST00000425787 232 ntBASIC6.89□□□□□ -1.31
MSX1P28360 NIPA2P1-201ENST00000426223 976 ntBASIC6.89□□□□□ -1.31
MSX1P28360 MTCO3P21-201ENST00000430791 643 ntBASIC6.89□□□□□ -1.31
MSX1P28360 RPL31P35-201ENST00000431058 377 ntBASIC6.89□□□□□ -1.31
MSX1P28360 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC6.89□□□□□ -1.31
MSX1P28360 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 MTND6P18-201ENST00000439477 513 ntBASIC6.89□□□□□ -1.31
MSX1P28360 AQP4-203ENST00000440832 1169 ntTSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC6.89□□□□□ -1.31
MSX1P28360 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC6.89□□□□□ -1.31
MSX1P28360 AC103563.5-201ENST00000455643 364 ntBASIC6.89□□□□□ -1.31
MSX1P28360 RPSAP48-201ENST00000466509 889 ntBASIC6.89□□□□□ -1.31
MSX1P28360 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.89□□□□□ -1.31
MSX1P28360 GRHL1-206ENST00000480736 572 ntTSL 4 BASIC6.89□□□□□ -1.31
MSX1P28360 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.89□□□□□ -1.31
MSX1P28360 MTND4LP22-201ENST00000508209 276 ntBASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms