Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ACACB-203ENST00000377854 6588 ntTSL 5 BASIC8□□□□□ -1.13
COL9A1P20849 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
COL9A1P20849 GIGYF2-205ENST00000409547 5978 ntTSL 1 (best) BASIC8□□□□□ -1.13
COL9A1P20849 PLPPR1-202ENST00000395056 2318 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
COL9A1P20849 LDB2-202ENST00000441778 2476 ntTSL 1 (best) BASIC8□□□□□ -1.13
COL9A1P20849 LDHA-204ENST00000396222 1766 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 BTN2A1-201ENST00000312541 2920 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 GNA12-203ENST00000407904 3918 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 FABP7-201ENST00000356535 2086 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 MELK-211ENST00000545008 2236 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 LINC00703-202ENST00000454152 2390 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 CCNB2-205ENST00000621385 2503 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 PAX6-209ENST00000419022 6888 ntAPPRIS P4 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 AC110769.2-201ENST00000602760 1548 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 TMEM144-201ENST00000296529 3442 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 MORF4L2-210ENST00000451301 1830 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 USP44-208ENST00000552440 1818 ntTSL 5 BASIC7.99□□□□□ -1.13
COL9A1P20849 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 NOS2P3-202ENST00000458685 3328 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 RNU6-238P-201ENST00000363313 106 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RNA5SP232-201ENST00000364144 119 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RNA5SP396-201ENST00000364834 120 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RNU6-169P-201ENST00000365336 107 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 AL450124.1-201ENST00000376401 353 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RNU6-730P-201ENST00000383954 104 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 Y_RNA.530-201ENST00000384587 101 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RNU6-606P-201ENST00000384721 111 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RNA5SP105-201ENST00000391123 113 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
COL9A1P20849 WDPCP-206ENST00000409562 3544 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC7.99□□□□□ -1.13
COL9A1P20849 AC007562.1-201ENST00000421819 517 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RPL7P4-203ENST00000430239 730 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RPS3AP54-201ENST00000435535 734 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 MSL3P1-201ENST00000438684 2032 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 GHRL-210ENST00000449238 440 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 AC104308.1-201ENST00000454621 333 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RPL12P25-201ENST00000455592 494 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RN7SL688P-201ENST00000471754 275 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 RPL12P31-201ENST00000478433 450 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 RN7SL849P-201ENST00000485236 295 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC7.99□□□□□ -1.13
COL9A1P20849 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 RPL7P20-201ENST00000520308 745 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 PLEKHA5-215ENST00000539256 3357 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC7.99□□□□□ -1.13
COL9A1P20849 CHURC1-203ENST00000549115 2629 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC7.99□□□□□ -1.13
COL9A1P20849 OR4T1P-201ENST00000554933 911 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC7.99□□□□□ -1.13
COL9A1P20849 MIR5186-201ENST00000577504 120 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 AP005210.1-201ENST00000583659 544 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC7.99□□□□□ -1.13
COL9A1P20849 U1.22-201ENST00000605806 164 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 AC104184.1-201ENST00000607513 721 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 AC000068.3-201ENST00000607934 427 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 AC098479.1-201ENST00000609225 154 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 AC107871.2-201ENST00000612894 502 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 U2.1-201ENST00000618978 145 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 AC022400.9-201ENST00000623633 273 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC7.99□□□□□ -1.13
COL9A1P20849 MAGI2-214ENST00000628781 2013 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 MIR4302-201ENST00000638058 60 ntBASIC7.99□□□□□ -1.13
COL9A1P20849 DNAH9-201ENST00000262442 13750 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 ARL11-201ENST00000282026 3760 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 HAUS6-201ENST00000380496 3756 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 ZNF136-201ENST00000343979 3643 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 SLC6A2-206ENST00000567238 3160 ntTSL 2 BASIC7.99□□□□□ -1.13
COL9A1P20849 FAM193A-204ENST00000505311 4110 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 ZNF3-207ENST00000424697 2718 ntAPPRIS P1 TSL 3 BASIC7.99□□□□□ -1.13
COL9A1P20849 GCSAML-211ENST00000623578 3959 ntAPPRIS ALT2 TSL 4 BASIC7.99□□□□□ -1.13
COL9A1P20849 BRPF3-212ENST00000534694 4628 ntTSL 5 BASIC7.99□□□□□ -1.13
COL9A1P20849 MAPK8-201ENST00000360332 5438 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 PAPD4-202ENST00000423041 3223 ntAPPRIS ALT1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 LINC01133-203ENST00000635112 1996 ntTSL 5 BASIC7.99□□□□□ -1.13
COL9A1P20849 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL9A1P20849 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
COL9A1P20849 AL049646.1-201ENST00000457009 2490 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 AHCYL2-208ENST00000474594 2047 ntTSL 2 BASIC7.98□□□□□ -1.13
COL9A1P20849 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 TTLL9-211ENST00000620043 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 AC114546.3-201ENST00000623582 1734 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 MYO1E-201ENST00000288235 8673 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 HDAC9-212ENST00000432645 3099 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 SPIN3-211ENST00000638712 4286 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 EGF-204ENST00000503392 3642 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms