Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC106871.1-201ENST00000568324 3102 ntBASIC3.48□□□□□ -1.85
PRKDCP78527 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC3.48□□□□□ -1.85
PRKDCP78527 SHROOM4-202ENST00000376020 9556 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
PRKDCP78527 AC079298.1-201ENST00000625026 1619 ntBASIC3.48□□□□□ -1.85
PRKDCP78527 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
PRKDCP78527 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
PRKDCP78527 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
PRKDCP78527 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
PRKDCP78527 RNU6-628P-201ENST00000410675 107 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 MIR2116-201ENST00000517221 80 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 AC087499.8-201ENST00000578406 226 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 TP63-201ENST00000264731 4909 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 GIGYF2-205ENST00000409547 5978 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 RNA5SP283-201ENST00000365604 119 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 MIR218-2-201ENST00000385006 110 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 YY1P1-201ENST00000427625 668 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 SEPT10P1-201ENST00000517342 1162 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 BUD31P1-201ENST00000521828 359 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 AL158152.1-201ENST00000602652 1435 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 TRERF1-204ENST00000372922 7286 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
PRKDCP78527 EP400NL-208ENST00000475841 7090 ntTSL 2 BASIC3.47□□□□□ -1.85
PRKDCP78527 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC3.47□□□□□ -1.85
PRKDCP78527 DNAH10-201ENST00000409039 14473 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 RNA5SP432-201ENST00000362480 116 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 SNORD1C-201ENST00000363315 78 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC3.47□□□□□ -1.85
PRKDCP78527 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 PDSS1P1-201ENST00000422953 1114 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 AL445584.1-201ENST00000431451 330 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 UBE2DNL-203ENST00000474922 222 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC3.47□□□□□ -1.85
PRKDCP78527 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC3.47□□□□□ -1.85
PRKDCP78527 AC022726.1-201ENST00000587475 207 ntBASIC3.47□□□□□ -1.85
PRKDCP78527 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC3.47□□□□□ -1.85
PRKDCP78527 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PRKDCP78527 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.85
PRKDCP78527 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC3.46□□□□□ -1.85
PRKDCP78527 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC3.46□□□□□ -1.85
PRKDCP78527 GLUD1P9-201ENST00000420997 1173 ntBASIC3.46□□□□□ -1.85
PRKDCP78527 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC3.46□□□□□ -1.85
PRKDCP78527 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC3.46□□□□□ -1.85
PRKDCP78527 RPL5P32-201ENST00000454085 879 ntBASIC3.46□□□□□ -1.85
PRKDCP78527 RN7SL441P-201ENST00000492388 296 ntBASIC3.46□□□□□ -1.85
PRKDCP78527 PRELID3BP6-201ENST00000503839 571 ntBASIC3.46□□□□□ -1.85
PRKDCP78527 GMPSP1-201ENST00000514075 579 ntBASIC3.46□□□□□ -1.85
PRKDCP78527 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC3.46□□□□□ -1.85
PRKDCP78527 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
PRKDCP78527 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.46□□□□□ -1.85
PRKDCP78527 AC108738.1-201ENST00000603703 237 ntBASIC3.46□□□□□ -1.85
PRKDCP78527 AC020978.9-201ENST00000624380 1141 ntBASIC3.46□□□□□ -1.85
PRKDCP78527 TAF1-201ENST00000276072 5692 ntAPPRIS P3 TSL 5 BASIC3.46□□□□□ -1.85
PRKDCP78527 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC3.46□□□□□ -1.85
PRKDCP78527 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC3.46□□□□□ -1.85
PRKDCP78527 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
PRKDCP78527 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
PRKDCP78527 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
PRKDCP78527 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
PRKDCP78527 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
PRKDCP78527 RNA5SP345-201ENST00000410646 108 ntBASIC3.46□□□□□ -1.86
PRKDCP78527 RPS26P38-201ENST00000414476 348 ntBASIC3.46□□□□□ -1.86
PRKDCP78527 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC3.46□□□□□ -1.86
PRKDCP78527 TRAV8-5-201ENST00000537369 341 ntBASIC3.46□□□□□ -1.86
PRKDCP78527 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.46□□□□□ -1.86
PRKDCP78527 PSMB7P1-201ENST00000556349 514 ntBASIC3.46□□□□□ -1.86
PRKDCP78527 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
PRKDCP78527 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
PRKDCP78527 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
PRKDCP78527 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
PRKDCP78527 MAX-203ENST00000341653 330 ntTSL 2 BASIC3.46□□□□□ -1.86
PRKDCP78527 RNA5SP124-201ENST00000362739 110 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms