Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC6.56□□□□□ -1.36
COL18A1P39060 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL18A1P39060 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL18A1P39060 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
COL18A1P39060 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL18A1P39060 IL6-206ENST00000407492 926 ntTSL 3 BASIC6.56□□□□□ -1.36
COL18A1P39060 RN7SKP27-201ENST00000410684 333 ntBASIC6.56□□□□□ -1.36
COL18A1P39060 TBCAP2-201ENST00000416175 326 ntBASIC6.56□□□□□ -1.36
COL18A1P39060 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC6.56□□□□□ -1.36
COL18A1P39060 OR4A6P-201ENST00000534364 970 ntBASIC6.56□□□□□ -1.36
COL18A1P39060 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC6.56□□□□□ -1.36
COL18A1P39060 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
COL18A1P39060 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC6.56□□□□□ -1.36
COL18A1P39060 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.56□□□□□ -1.36
COL18A1P39060 AL049839.1-201ENST00000556151 657 ntBASIC6.56□□□□□ -1.36
COL18A1P39060 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC6.56□□□□□ -1.36
COL18A1P39060 RPL12P25-202ENST00000598100 674 ntBASIC6.56□□□□□ -1.36
COL18A1P39060 AC008782.1-201ENST00000603386 430 ntBASIC6.56□□□□□ -1.36
COL18A1P39060 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL18A1P39060 IPO5-229ENST00000631030 192 ntTSL 5 BASIC6.56□□□□□ -1.36
COL18A1P39060 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
COL18A1P39060 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.56□□□□□ -1.36
COL18A1P39060 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL18A1P39060 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL18A1P39060 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL18A1P39060 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC6.55□□□□□ -1.36
COL18A1P39060 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL18A1P39060 AC133552.1-201ENST00000569988 4007 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.55□□□□□ -1.36
COL18A1P39060 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.55□□□□□ -1.36
COL18A1P39060 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL18A1P39060 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC6.55□□□□□ -1.36
COL18A1P39060 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
COL18A1P39060 AC092681.1-201ENST00000297369 291 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 RNA5SP515-201ENST00000364570 118 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 AL390316.1-201ENST00000406279 553 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 CENPIP1-201ENST00000425713 902 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL18A1P39060 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.55□□□□□ -1.36
COL18A1P39060 PARP1P2-201ENST00000556806 195 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 AC018558.5-201ENST00000565840 952 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC6.55□□□□□ -1.36
COL18A1P39060 AC010424.2-201ENST00000607594 443 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 CCDC162P-202ENST00000368966 6751 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 HYDIN2-203ENST00000614586 13885 ntBASIC6.55□□□□□ -1.36
COL18A1P39060 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL18A1P39060 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL18A1P39060 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL18A1P39060 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL18A1P39060 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.55□□□□□ -1.36
COL18A1P39060 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL18A1P39060 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL18A1P39060 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.55□□□□□ -1.36
COL18A1P39060 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.54□□□□□ -1.36
COL18A1P39060 RNA5SP223-201ENST00000365174 120 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 SNORA70.10-201ENST00000384515 134 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 RNA5SP397-201ENST00000391323 118 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 AL035079.1-201ENST00000405210 287 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 RPS5P7-201ENST00000456664 608 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 AC022133.1-201ENST00000490961 571 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 CDV3-208ENST00000511392 554 ntTSL 5 BASIC6.54□□□□□ -1.36
COL18A1P39060 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC6.54□□□□□ -1.36
COL18A1P39060 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.54□□□□□ -1.36
COL18A1P39060 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC6.54□□□□□ -1.36
COL18A1P39060 MIR5699-201ENST00000578903 90 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL18A1P39060 AC125494.2-201ENST00000602431 657 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC6.54□□□□□ -1.36
COL18A1P39060 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL18A1P39060 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.54□□□□□ -1.36
COL18A1P39060 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL18A1P39060 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 AC107980.1-201ENST00000558671 3355 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 OR56B2P-202ENST00000641377 2453 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC6.54□□□□□ -1.36
COL18A1P39060 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
COL18A1P39060 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL18A1P39060 AC010401.2-201ENST00000575137 4934 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.54□□□□□ -1.36
COL18A1P39060 AC004076.2-201ENST00000620532 3323 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 AC007382.1-201ENST00000624376 2618 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL18A1P39060 SMG1P6-201ENST00000532337 2930 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL18A1P39060 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL18A1P39060 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
COL18A1P39060 AC016831.4-201ENST00000438302 307 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 AK3P4-201ENST00000504283 583 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC6.54□□□□□ -1.36
COL18A1P39060 AP005119.2-201ENST00000579735 1105 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.54□□□□□ -1.36
COL18A1P39060 AC005962.2-201ENST00000611427 652 ntBASIC6.54□□□□□ -1.36
COL18A1P39060 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL18A1P39060 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.54□□□□□ -1.36
COL18A1P39060 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
COL18A1P39060 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL18A1P39060 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 AL355834.1-201ENST00000556602 3965 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms