Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RN7SKP275-201ENST00000364626 301 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 RNU1-59P-201ENST00000364829 162 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AL353625.1-202ENST00000366273 571 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 RNU6-207P-201ENST00000384137 107 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 GSTA8P-201ENST00000404253 637 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 RPS4XP5-201ENST00000419038 768 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 RPS3AP38-201ENST00000435889 763 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 FABP5P3-201ENST00000437960 408 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 AL663074.2-201ENST00000440621 479 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 NPM1P49-201ENST00000448027 714 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AL603882.1-201ENST00000463059 681 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 PFN1P6-201ENST00000476786 399 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC025458.1-201ENST00000506046 166 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 Y_RNA.667-201ENST00000516212 107 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 RNA5SP438-201ENST00000516561 112 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 MTCO2P15-201ENST00000532655 656 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC068305.2-201ENST00000550567 1205 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC090888.1-201ENST00000561335 1141 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 GARSP1-201ENST00000570895 719 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 MIR4776-2-201ENST00000580204 80 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 DEFB131E-202ENST00000602581 683 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 U1.25-201ENST00000614085 162 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 AL355974.3-201ENST00000617383 467 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 U1.34-201ENST00000618578 162 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 U1.31-201ENST00000620022 160 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 OR11H2-202ENST00000641517 1085 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC025263.3-201ENST00000622965 1396 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VRK3Q8IV63 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VRK3Q8IV63 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 IMMTP1-201ENST00000435590 2219 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 AP004289.1-201ENST00000436307 2205 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VRK3Q8IV63 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VRK3Q8IV63 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
VRK3Q8IV63 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VRK3Q8IV63 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VRK3Q8IV63 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VRK3Q8IV63 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
VRK3Q8IV63 AL356131.1-201ENST00000405826 414 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 RN7SKP240-201ENST00000410583 375 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 RPS26P38-201ENST00000414476 348 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 AC066692.1-201ENST00000421721 457 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VRK3Q8IV63 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 AC245884.2-201ENST00000426257 404 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 PTP4A1P3-201ENST00000433661 420 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 USP24P1-201ENST00000433802 779 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 AC084290.1-201ENST00000434995 374 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 NDUFS5P5-201ENST00000437256 321 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 AL138878.2-201ENST00000440581 1241 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 ARL4AP3-201ENST00000441452 574 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 AC118469.1-201ENST00000442943 488 ntBASIC5.79□□□□□ -1.48
VRK3Q8IV63 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.79□□□□□ -1.48
VRK3Q8IV63 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 170.5 ms