Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC37.3■■■■□ 3.56
SHROOM4Q9ULL8 GPX4-207ENST00000589115 812 ntTSL 2 BASIC37.3■■■■□ 3.56
SHROOM4Q9ULL8 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC37.3■■■■□ 3.56
SHROOM4Q9ULL8 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC37.3■■■■□ 3.56
SHROOM4Q9ULL8 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC37.3■■■■□ 3.56
SHROOM4Q9ULL8 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 AC092647.4-201ENST00000457211 535 ntBASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 AC010653.2-201ENST00000623505 997 ntBASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 CLN6-214ENST00000636314 442 ntTSL 3 BASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 AC116351.2-201ENST00000606540 1585 ntBASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC37.29■■■■□ 3.56
SHROOM4Q9ULL8 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC37.28■■■■□ 3.56
SHROOM4Q9ULL8 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC37.28■■■■□ 3.56
SHROOM4Q9ULL8 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC37.28■■■■□ 3.56
SHROOM4Q9ULL8 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC37.28■■■■□ 3.56
SHROOM4Q9ULL8 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC37.28■■■■□ 3.56
SHROOM4Q9ULL8 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC37.28■■■■□ 3.56
SHROOM4Q9ULL8 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC37.28■■■■□ 3.56
SHROOM4Q9ULL8 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 COX11P1-201ENST00000489116 835 ntBASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 AC005332.1-201ENST00000577698 1310 ntBASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 AC018553.1-201ENST00000616682 1458 ntBASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC37.27■■■■□ 3.56
SHROOM4Q9ULL8 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC37.26■■■■□ 3.56
SHROOM4Q9ULL8 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC37.26■■■■□ 3.56
SHROOM4Q9ULL8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC37.26■■■■□ 3.56
SHROOM4Q9ULL8 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC37.26■■■■□ 3.56
SHROOM4Q9ULL8 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC37.26■■■■□ 3.56
SHROOM4Q9ULL8 PALM-208ENST00000592155 2272 ntTSL 4 BASIC37.26■■■■□ 3.56
SHROOM4Q9ULL8 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC37.26■■■■□ 3.55
SHROOM4Q9ULL8 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC37.26■■■■□ 3.55
SHROOM4Q9ULL8 ANKRD20A18P-201ENST00000359341 492 ntBASIC37.26■■■■□ 3.55
SHROOM4Q9ULL8 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC37.26■■■■□ 3.55
SHROOM4Q9ULL8 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC37.26■■■■□ 3.55
SHROOM4Q9ULL8 AC011506.1-201ENST00000474329 610 ntBASIC37.26■■■■□ 3.55
SHROOM4Q9ULL8 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC37.26■■■■□ 3.55
SHROOM4Q9ULL8 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC37.26■■■■□ 3.55
SHROOM4Q9ULL8 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC37.26■■■■□ 3.55
SHROOM4Q9ULL8 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 AC097488.1-201ENST00000507834 756 ntBASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC37.25■■■■□ 3.55
SHROOM4Q9ULL8 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC37.24■■■■□ 3.55
SHROOM4Q9ULL8 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC37.24■■■■□ 3.55
SHROOM4Q9ULL8 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC37.24■■■■□ 3.55
SHROOM4Q9ULL8 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC37.24■■■■□ 3.55
SHROOM4Q9ULL8 HOMER2P1-201ENST00000455653 964 ntBASIC37.24■■■■□ 3.55
SHROOM4Q9ULL8 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC37.24■■■■□ 3.55
SHROOM4Q9ULL8 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC37.24■■■■□ 3.55
SHROOM4Q9ULL8 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC37.24■■■■□ 3.55
SHROOM4Q9ULL8 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC37.24■■■■□ 3.55
SHROOM4Q9ULL8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC37.24■■■■□ 3.55
SHROOM4Q9ULL8 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC37.23■■■■□ 3.55
SHROOM4Q9ULL8 TFP1-202ENST00000475455 1573 ntBASIC37.23■■■■□ 3.55
SHROOM4Q9ULL8 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC37.23■■■■□ 3.55
SHROOM4Q9ULL8 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC37.23■■■■□ 3.55
SHROOM4Q9ULL8 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC37.23■■■■□ 3.55
SHROOM4Q9ULL8 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC37.23■■■■□ 3.55
SHROOM4Q9ULL8 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC37.23■■■■□ 3.55
SHROOM4Q9ULL8 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC37.23■■■■□ 3.55
SHROOM4Q9ULL8 STK25-204ENST00000405585 1643 ntTSL 2 BASIC37.23■■■■□ 3.55
SHROOM4Q9ULL8 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 AC093458.2-201ENST00000623150 629 ntBASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC37.22■■■■□ 3.55
SHROOM4Q9ULL8 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
SHROOM4Q9ULL8 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC37.21■■■■□ 3.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms