Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 AC092368.3-202ENST00000574180 1591 ntBASIC20.21■□□□□ 0.83
PCDH9Q9HC56 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PCDH9Q9HC56 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 AC005829.2-201ENST00000571422 1056 ntBASIC20.2■□□□□ 0.82
PCDH9Q9HC56 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PCDH9Q9HC56 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 AL390719.1-204ENST00000412397 1219 ntBASIC20.19■□□□□ 0.82
PCDH9Q9HC56 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 PNMA6B-201ENST00000538162 1200 ntBASIC20.19■□□□□ 0.82
PCDH9Q9HC56 KRT18P6-201ENST00000555540 1265 ntBASIC20.19■□□□□ 0.82
PCDH9Q9HC56 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDH9Q9HC56 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PCDH9Q9HC56 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms