Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 NBPF21P-201ENST00000425093 1451 ntBASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCIF1Q9H4Z3 TREX1-205ENST00000625293 1783 ntBASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 AC239809.2-201ENST00000415381 517 ntBASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCIF1Q9H4Z3 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCIF1Q9H4Z3 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 RPPH1-201ENST00000516869 333 ntBASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 AC124016.1-201ENST00000609552 612 ntBASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCIF1Q9H4Z3 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 YBX1P10-201ENST00000444752 975 ntBASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 AC098590.1-201ENST00000468126 897 ntBASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
PCIF1Q9H4Z3 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCIF1Q9H4Z3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
PCIF1Q9H4Z3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PCIF1Q9H4Z3 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCIF1Q9H4Z3 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PCIF1Q9H4Z3 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.39■■□□□ 1.02
PCIF1Q9H4Z3 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCIF1Q9H4Z3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCIF1Q9H4Z3 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms