Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.24■□□□□ 0.35
VRK1Q99986 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.24■□□□□ 0.35
VRK1Q99986 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VRK1Q99986 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.24■□□□□ 0.35
VRK1Q99986 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VRK1Q99986 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VRK1Q99986 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
VRK1Q99986 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VRK1Q99986 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
VRK1Q99986 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.24■□□□□ 0.35
VRK1Q99986 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
VRK1Q99986 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VRK1Q99986 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
VRK1Q99986 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VRK1Q99986 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.24■□□□□ 0.35
VRK1Q99986 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VRK1Q99986 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
VRK1Q99986 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.24■□□□□ 0.35
VRK1Q99986 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VRK1Q99986 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VRK1Q99986 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.24■□□□□ 0.35
VRK1Q99986 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VRK1Q99986 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.23■□□□□ 0.35
VRK1Q99986 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
VRK1Q99986 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VRK1Q99986 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VRK1Q99986 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.23■□□□□ 0.35
VRK1Q99986 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
VRK1Q99986 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.23■□□□□ 0.35
VRK1Q99986 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.23■□□□□ 0.35
VRK1Q99986 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.23■□□□□ 0.35
VRK1Q99986 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK1Q99986 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.23■□□□□ 0.35
VRK1Q99986 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK1Q99986 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VRK1Q99986 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 AC116562.4-201ENST00000641316 2276 ntBASIC17.22■□□□□ 0.35
VRK1Q99986 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.22■□□□□ 0.35
VRK1Q99986 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK1Q99986 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK1Q99986 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
VRK1Q99986 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VRK1Q99986 POM121L13P-201ENST00000422362 380 ntBASIC17.22■□□□□ 0.35
VRK1Q99986 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK1Q99986 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
VRK1Q99986 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.22■□□□□ 0.35
VRK1Q99986 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK1Q99986 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK1Q99986 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
VRK1Q99986 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
VRK1Q99986 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VRK1Q99986 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
VRK1Q99986 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.21■□□□□ 0.35
VRK1Q99986 AC007225.1-201ENST00000566331 1836 ntBASIC17.21■□□□□ 0.35
VRK1Q99986 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VRK1Q99986 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
VRK1Q99986 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK1Q99986 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.21■□□□□ 0.35
VRK1Q99986 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.21■□□□□ 0.35
VRK1Q99986 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK1Q99986 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK1Q99986 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.21■□□□□ 0.35
VRK1Q99986 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VRK1Q99986 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK1Q99986 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.21■□□□□ 0.35
VRK1Q99986 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VRK1Q99986 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VRK1Q99986 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK1Q99986 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK1Q99986 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VRK1Q99986 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.21■□□□□ 0.35
VRK1Q99986 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
VRK1Q99986 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK1Q99986 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.21■□□□□ 0.35
VRK1Q99986 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.21■□□□□ 0.35
VRK1Q99986 AL359736.2-201ENST00000621992 437 ntBASIC17.21■□□□□ 0.35
VRK1Q99986 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
VRK1Q99986 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms