Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD1Q96NR3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 TCF3P1-201ENST00000423021 1937 ntBASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 KRT16P5-201ENST00000455284 522 ntBASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.47■□□□□ 0.55
PTCHD1Q96NR3 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.46■□□□□ 0.55
PTCHD1Q96NR3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.46■□□□□ 0.54
PTCHD1Q96NR3 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
PTCHD1Q96NR3 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
PTCHD1Q96NR3 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 YBX1P10-201ENST00000444752 975 ntBASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 AC008550.1-201ENST00000511500 884 ntBASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 AC093827.2-201ENST00000512654 315 ntBASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.45■□□□□ 0.54
PTCHD1Q96NR3 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 AC009237.14-201ENST00000609975 1594 ntBASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD1Q96NR3 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms