Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VMP1Q96GC9 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
VMP1Q96GC9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.72■□□□□ 0.59
VMP1Q96GC9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VMP1Q96GC9 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VMP1Q96GC9 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VMP1Q96GC9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VMP1Q96GC9 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VMP1Q96GC9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VMP1Q96GC9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.72■□□□□ 0.59
VMP1Q96GC9 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.72■□□□□ 0.59
VMP1Q96GC9 AC023632.3-201ENST00000521633 145 ntBASIC18.72■□□□□ 0.59
VMP1Q96GC9 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.72■□□□□ 0.59
VMP1Q96GC9 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.72■□□□□ 0.59
VMP1Q96GC9 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VMP1Q96GC9 AC116562.4-201ENST00000641316 2276 ntBASIC18.72■□□□□ 0.59
VMP1Q96GC9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.72■□□□□ 0.59
VMP1Q96GC9 AC020907.5-201ENST00000624372 1936 ntBASIC18.72■□□□□ 0.59
VMP1Q96GC9 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VMP1Q96GC9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VMP1Q96GC9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.72■□□□□ 0.59
VMP1Q96GC9 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VMP1Q96GC9 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
VMP1Q96GC9 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 ITM2C-210ENST00000620962 501 ntBASIC18.71■□□□□ 0.59
VMP1Q96GC9 TMEM191A-211ENST00000637163 1067 ntBASIC18.71■□□□□ 0.59
VMP1Q96GC9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VMP1Q96GC9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
VMP1Q96GC9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
VMP1Q96GC9 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.71■□□□□ 0.58
VMP1Q96GC9 AL162377.1-201ENST00000618844 1793 ntBASIC18.7■□□□□ 0.58
VMP1Q96GC9 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 AC092720.2-201ENST00000602388 1665 ntBASIC18.7■□□□□ 0.58
VMP1Q96GC9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 KRT18P29-201ENST00000397031 1267 ntBASIC18.7■□□□□ 0.58
VMP1Q96GC9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 AC008403.3-201ENST00000598924 454 ntBASIC18.7■□□□□ 0.58
VMP1Q96GC9 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 AP000974.1-201ENST00000623909 2387 ntBASIC18.7■□□□□ 0.58
VMP1Q96GC9 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VMP1Q96GC9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VMP1Q96GC9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VMP1Q96GC9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.69■□□□□ 0.58
VMP1Q96GC9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VMP1Q96GC9 AC112907.3-201ENST00000577781 2400 ntBASIC18.69■□□□□ 0.58
VMP1Q96GC9 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms