Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RPS2P55-201ENST00000397318 883 ntBASIC20.08■□□□□ 0.81
SKA1Q96BD8 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SKA1Q96BD8 AC107956.1-201ENST00000494359 873 ntBASIC20.08■□□□□ 0.81
SKA1Q96BD8 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.08■□□□□ 0.81
SKA1Q96BD8 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.08■□□□□ 0.81
SKA1Q96BD8 AC233702.5-201ENST00000584107 538 ntBASIC20.08■□□□□ 0.81
SKA1Q96BD8 AC124016.1-201ENST00000609552 612 ntBASIC20.08■□□□□ 0.81
SKA1Q96BD8 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SKA1Q96BD8 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SKA1Q96BD8 AP000974.1-201ENST00000623909 2387 ntBASIC20.07■□□□□ 0.8
SKA1Q96BD8 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.07■□□□□ 0.8
SKA1Q96BD8 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 TNXA-203ENST00000507684 2038 ntBASIC20.07■□□□□ 0.8
SKA1Q96BD8 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.07■□□□□ 0.8
SKA1Q96BD8 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SKA1Q96BD8 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA1Q96BD8 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
SKA1Q96BD8 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.06■□□□□ 0.8
SKA1Q96BD8 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA1Q96BD8 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA1Q96BD8 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA1Q96BD8 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.06■□□□□ 0.8
SKA1Q96BD8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
SKA1Q96BD8 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SKA1Q96BD8 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.06■□□□□ 0.8
SKA1Q96BD8 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.06■□□□□ 0.8
SKA1Q96BD8 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
SKA1Q96BD8 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SKA1Q96BD8 REXO1L12P-201ENST00000622156 912 ntBASIC20.06■□□□□ 0.8
SKA1Q96BD8 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.06■□□□□ 0.8
SKA1Q96BD8 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SKA1Q96BD8 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA1Q96BD8 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SKA1Q96BD8 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
SKA1Q96BD8 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
SKA1Q96BD8 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SKA1Q96BD8 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.05■□□□□ 0.8
SKA1Q96BD8 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SKA1Q96BD8 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.05■□□□□ 0.8
SKA1Q96BD8 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.05■□□□□ 0.8
SKA1Q96BD8 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SKA1Q96BD8 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SKA1Q96BD8 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
SKA1Q96BD8 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SKA1Q96BD8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.05■□□□□ 0.8
SKA1Q96BD8 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SKA1Q96BD8 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SKA1Q96BD8 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SKA1Q96BD8 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SKA1Q96BD8 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.04■□□□□ 0.8
SKA1Q96BD8 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.04■□□□□ 0.8
SKA1Q96BD8 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SKA1Q96BD8 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA1Q96BD8 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA1Q96BD8 AC092720.2-201ENST00000602388 1665 ntBASIC20.04■□□□□ 0.8
SKA1Q96BD8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SKA1Q96BD8 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.04■□□□□ 0.8
SKA1Q96BD8 KRASP1-201ENST00000407852 552 ntBASIC20.04■□□□□ 0.8
SKA1Q96BD8 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SKA1Q96BD8 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SKA1Q96BD8 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.04■□□□□ 0.8
SKA1Q96BD8 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.04■□□□□ 0.8
SKA1Q96BD8 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.04■□□□□ 0.8
SKA1Q96BD8 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SKA1Q96BD8 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA1Q96BD8 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA1Q96BD8 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SKA1Q96BD8 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SKA1Q96BD8 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA1Q96BD8 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.04■□□□□ 0.8
SKA1Q96BD8 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SKA1Q96BD8 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SKA1Q96BD8 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SKA1Q96BD8 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SKA1Q96BD8 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SKA1Q96BD8 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.03■□□□□ 0.8
SKA1Q96BD8 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms