Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP39Q53GS9 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP39Q53GS9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP39Q53GS9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.91■□□□□ 0.78
USP39Q53GS9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.91■□□□□ 0.78
USP39Q53GS9 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP39Q53GS9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.91■□□□□ 0.78
USP39Q53GS9 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.91■□□□□ 0.78
USP39Q53GS9 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP39Q53GS9 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP39Q53GS9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.91■□□□□ 0.78
USP39Q53GS9 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.91■□□□□ 0.78
USP39Q53GS9 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.91■□□□□ 0.78
USP39Q53GS9 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.91■□□□□ 0.78
USP39Q53GS9 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
USP39Q53GS9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
USP39Q53GS9 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP39Q53GS9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP39Q53GS9 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP39Q53GS9 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP39Q53GS9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
USP39Q53GS9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP39Q53GS9 AC092667.1-201ENST00000434301 2586 ntBASIC19.9■□□□□ 0.78
USP39Q53GS9 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
USP39Q53GS9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 GABARAPL3-202ENST00000624044 1851 ntBASIC19.9■□□□□ 0.78
USP39Q53GS9 AP005212.1-201ENST00000581547 1997 ntBASIC19.9■□□□□ 0.78
USP39Q53GS9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
USP39Q53GS9 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.9■□□□□ 0.78
USP39Q53GS9 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.9■□□□□ 0.78
USP39Q53GS9 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 LIN28AP1-201ENST00000429574 405 ntBASIC19.9■□□□□ 0.78
USP39Q53GS9 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
USP39Q53GS9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.9■□□□□ 0.78
USP39Q53GS9 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.9■□□□□ 0.78
USP39Q53GS9 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 AC073508.3-201ENST00000619697 1419 ntBASIC19.9■□□□□ 0.78
USP39Q53GS9 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
USP39Q53GS9 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
USP39Q53GS9 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.9■□□□□ 0.78
USP39Q53GS9 AC073314.1-201ENST00000568729 2216 ntBASIC19.9■□□□□ 0.78
USP39Q53GS9 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP39Q53GS9 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
USP39Q53GS9 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.89■□□□□ 0.78
USP39Q53GS9 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP39Q53GS9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP39Q53GS9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP39Q53GS9 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP39Q53GS9 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.89■□□□□ 0.77
USP39Q53GS9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP39Q53GS9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP39Q53GS9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.89■□□□□ 0.77
USP39Q53GS9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
USP39Q53GS9 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.89■□□□□ 0.77
USP39Q53GS9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.89■□□□□ 0.77
USP39Q53GS9 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.89■□□□□ 0.77
USP39Q53GS9 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.89■□□□□ 0.77
USP39Q53GS9 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP39Q53GS9 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.89■□□□□ 0.77
USP39Q53GS9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.89■□□□□ 0.77
USP39Q53GS9 FSCN1P1-201ENST00000568912 1481 ntBASIC19.89■□□□□ 0.77
USP39Q53GS9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP39Q53GS9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP39Q53GS9 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
USP39Q53GS9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
USP39Q53GS9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
USP39Q53GS9 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.88■□□□□ 0.77
USP39Q53GS9 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.88■□□□□ 0.77
USP39Q53GS9 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
USP39Q53GS9 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.88■□□□□ 0.77
USP39Q53GS9 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.88■□□□□ 0.77
USP39Q53GS9 ATP5G1P1-201ENST00000448724 379 ntBASIC19.88■□□□□ 0.77
USP39Q53GS9 DUX4L26-201ENST00000489078 1255 ntBASIC19.88■□□□□ 0.77
USP39Q53GS9 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.88■□□□□ 0.77
USP39Q53GS9 C2orf69P3-201ENST00000565542 1120 ntBASIC19.88■□□□□ 0.77
USP39Q53GS9 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.88■□□□□ 0.77
USP39Q53GS9 NTF6B-201ENST00000591913 560 ntBASIC19.88■□□□□ 0.77
USP39Q53GS9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.88■□□□□ 0.77
USP39Q53GS9 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP39Q53GS9 PTBP1P-201ENST00000554374 1601 ntBASIC19.87■□□□□ 0.77
USP39Q53GS9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms