Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 AC010536.3-201ENST00000620306 533 ntBASIC17.41■□□□□ 0.38
LIMS4P0CW20 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 AC141586.3-201ENST00000562166 1838 ntBASIC17.41■□□□□ 0.38
LIMS4P0CW20 TEX21P-204ENST00000641479 1693 ntBASIC17.41■□□□□ 0.38
LIMS4P0CW20 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMS4P0CW20 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMS4P0CW20 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMS4P0CW20 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMS4P0CW20 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMS4P0CW20 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMS4P0CW20 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMS4P0CW20 MCRIP2P1-201ENST00000394346 511 ntBASIC17.4■□□□□ 0.38
LIMS4P0CW20 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 GALNS-213ENST00000569433 723 ntTSL 3 BASIC17.4■□□□□ 0.38
LIMS4P0CW20 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.4■□□□□ 0.38
LIMS4P0CW20 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMS4P0CW20 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMS4P0CW20 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
LIMS4P0CW20 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LIMS4P0CW20 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.39■□□□□ 0.38
LIMS4P0CW20 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LIMS4P0CW20 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.39■□□□□ 0.38
LIMS4P0CW20 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMS4P0CW20 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
LIMS4P0CW20 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMS4P0CW20 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMS4P0CW20 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
LIMS4P0CW20 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMS4P0CW20 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMS4P0CW20 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMS4P0CW20 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMS4P0CW20 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMS4P0CW20 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.39■□□□□ 0.37
LIMS4P0CW20 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
LIMS4P0CW20 SP2-202ENST00000613139 908 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMS4P0CW20 AC100791.3-201ENST00000617619 330 ntBASIC17.39■□□□□ 0.37
LIMS4P0CW20 AC105020.6-201ENST00000621523 1217 ntBASIC17.39■□□□□ 0.37
LIMS4P0CW20 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMS4P0CW20 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMS4P0CW20 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMS4P0CW20 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMS4P0CW20 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMS4P0CW20 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
LIMS4P0CW20 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 AC007322.4-201ENST00000509611 723 ntBASIC17.38■□□□□ 0.37
LIMS4P0CW20 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMS4P0CW20 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMS4P0CW20 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms