Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
MSH4O15457 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
MSH4O15457 SNORA78-201ENST00000459373 127 ntBASIC22.06■■□□□ 1.12
MSH4O15457 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC22.06■■□□□ 1.12
MSH4O15457 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
MSH4O15457 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH4O15457 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH4O15457 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH4O15457 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH4O15457 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH4O15457 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC22.06■■□□□ 1.12
MSH4O15457 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH4O15457 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH4O15457 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH4O15457 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH4O15457 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH4O15457 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH4O15457 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH4O15457 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC22.05■■□□□ 1.12
MSH4O15457 NIFKP9-201ENST00000419265 221 ntBASIC22.05■■□□□ 1.12
MSH4O15457 AP002982.1-201ENST00000492365 877 ntBASIC22.05■■□□□ 1.12
MSH4O15457 MIR4497-201ENST00000583208 89 ntBASIC22.05■■□□□ 1.12
MSH4O15457 AC073195.1-201ENST00000607241 877 ntBASIC22.05■■□□□ 1.12
MSH4O15457 AP001412.1-201ENST00000608405 714 ntBASIC22.05■■□□□ 1.12
MSH4O15457 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH4O15457 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH4O15457 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC22.05■■□□□ 1.12
MSH4O15457 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
MSH4O15457 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC22.05■■□□□ 1.12
MSH4O15457 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH4O15457 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
MSH4O15457 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
MSH4O15457 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
MSH4O15457 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC22.04■■□□□ 1.12
MSH4O15457 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
MSH4O15457 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.04■■□□□ 1.12
MSH4O15457 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 TSPY7P-201ENST00000431358 1114 ntBASIC22.04■■□□□ 1.12
MSH4O15457 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC22.04■■□□□ 1.12
MSH4O15457 GRAP-204ENST00000573099 846 ntTSL 3 BASIC22.04■■□□□ 1.12
MSH4O15457 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC22.04■■□□□ 1.12
MSH4O15457 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC22.04■■□□□ 1.12
MSH4O15457 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC22.04■■□□□ 1.12
MSH4O15457 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
MSH4O15457 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH4O15457 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH4O15457 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH4O15457 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.03■■□□□ 1.12
MSH4O15457 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH4O15457 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.03■■□□□ 1.12
MSH4O15457 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH4O15457 FAM197Y1-201ENST00000421178 764 ntBASIC22.03■■□□□ 1.12
MSH4O15457 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.03■■□□□ 1.12
MSH4O15457 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
MSH4O15457 PENK-204ENST00000518770 863 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH4O15457 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH4O15457 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC22.03■■□□□ 1.12
MSH4O15457 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH4O15457 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH4O15457 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC22.03■■□□□ 1.12
MSH4O15457 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
MSH4O15457 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH4O15457 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH4O15457 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH4O15457 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC22.03■■□□□ 1.12
MSH4O15457 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH4O15457 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH4O15457 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH4O15457 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH4O15457 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH4O15457 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC22.02■■□□□ 1.12
MSH4O15457 NME1-207ENST00000480143 964 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH4O15457 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH4O15457 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH4O15457 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
MSH4O15457 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.02■■□□□ 1.12
MSH4O15457 CD177P1-201ENST00000606252 935 ntBASIC22.02■■□□□ 1.12
MSH4O15457 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH4O15457 HLA-A-209ENST00000638375 975 ntBASIC22.02■■□□□ 1.12
MSH4O15457 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH4O15457 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH4O15457 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH4O15457 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
MSH4O15457 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC22.02■■□□□ 1.11
MSH4O15457 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
MSH4O15457 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
MSH4O15457 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms