Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
UBFD1O14562 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
UBFD1O14562 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.02■□□□□ 0.63
UBFD1O14562 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.01■□□□□ 0.63
UBFD1O14562 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.01■□□□□ 0.63
UBFD1O14562 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.01■□□□□ 0.63
UBFD1O14562 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.01■□□□□ 0.63
UBFD1O14562 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.01■□□□□ 0.63
UBFD1O14562 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.01■□□□□ 0.63
UBFD1O14562 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 RAP2CP1-201ENST00000605103 478 ntBASIC19.01■□□□□ 0.63
UBFD1O14562 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.01■□□□□ 0.63
UBFD1O14562 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
UBFD1O14562 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.01■□□□□ 0.63
UBFD1O14562 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
UBFD1O14562 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
UBFD1O14562 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
UBFD1O14562 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
UBFD1O14562 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19■□□□□ 0.63
UBFD1O14562 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19■□□□□ 0.63
UBFD1O14562 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19■□□□□ 0.63
UBFD1O14562 AF201337.1-201ENST00000520239 748 ntBASIC19■□□□□ 0.63
UBFD1O14562 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19■□□□□ 0.63
UBFD1O14562 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19■□□□□ 0.63
UBFD1O14562 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19■□□□□ 0.63
UBFD1O14562 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
UBFD1O14562 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
UBFD1O14562 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
UBFD1O14562 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
UBFD1O14562 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
UBFD1O14562 AL049812.1-201ENST00000432563 2267 ntBASIC18.99■□□□□ 0.63
UBFD1O14562 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.99■□□□□ 0.63
UBFD1O14562 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.99■□□□□ 0.63
UBFD1O14562 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.99■□□□□ 0.63
UBFD1O14562 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.99■□□□□ 0.63
UBFD1O14562 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.99■□□□□ 0.63
UBFD1O14562 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.99■□□□□ 0.63
UBFD1O14562 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.99■□□□□ 0.63
UBFD1O14562 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBFD1O14562 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
UBFD1O14562 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.98■□□□□ 0.63
UBFD1O14562 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.98■□□□□ 0.63
UBFD1O14562 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
UBFD1O14562 AL161938.1-201ENST00000569833 2180 ntBASIC18.98■□□□□ 0.63
UBFD1O14562 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.98■□□□□ 0.63
UBFD1O14562 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.98■□□□□ 0.63
UBFD1O14562 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.98■□□□□ 0.63
UBFD1O14562 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.98■□□□□ 0.63
UBFD1O14562 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
UBFD1O14562 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.98■□□□□ 0.63
UBFD1O14562 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.98■□□□□ 0.63
UBFD1O14562 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.98■□□□□ 0.63
UBFD1O14562 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
UBFD1O14562 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.98■□□□□ 0.63
UBFD1O14562 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
UBFD1O14562 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 TEX21P-204ENST00000641479 1693 ntBASIC18.98■□□□□ 0.63
UBFD1O14562 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
UBFD1O14562 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms