Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 KRT18P13-201ENST00000400056 1290 ntBASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 SPDYE15P-201ENST00000424157 909 ntBASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 AC092119.3-201ENST00000612618 583 ntBASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 AL645929.1-201ENST00000420084 975 ntBASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A6A6NMZ7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 BX640515.1-201ENST00000617215 977 ntBASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 KRT8P20-201ENST00000423953 1409 ntBASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 TSPY12P-201ENST00000421279 868 ntBASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.67■□□□□ 0.42
COL6A6A6NMZ7 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 HLA-G-202ENST00000376815 851 ntBASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 HLA-G-203ENST00000376818 1127 ntBASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL6A6A6NMZ7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 AC012615.1-201ENST00000565797 1299 ntBASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms