Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC000068.2-201ENST00000608816 460 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 AC108359.1-201ENST00000616451 1211 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 AC118658.2-201ENST00000618697 459 ntBASIC5.61□□□□□ -1.51
CCDC42Q96M95 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC42Q96M95 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC42Q96M95 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 PCAT14-202ENST00000627127 3935 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC42Q96M95 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC42Q96M95 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC42Q96M95 MIR133B-201ENST00000362210 119 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 RNA5SP319-201ENST00000362768 119 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 RN7SKP187-201ENST00000365536 330 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 OR7E156P-201ENST00000400303 464 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 AL035079.1-201ENST00000405210 287 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 RPS11P7-201ENST00000442125 465 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 EIF4E2P2-201ENST00000492033 736 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 RPL37P23-201ENST00000492641 294 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 AC090638.1-201ENST00000498296 909 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 RNU6-513P-201ENST00000516104 104 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 AC105031.1-201ENST00000518550 476 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 TOMM20P1-201ENST00000534518 427 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 NANOGNBP2-201ENST00000544753 553 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 MIR4505-201ENST00000582238 73 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 MIR6780B-201ENST00000610307 79 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 AC104260.2-201ENST00000623551 3497 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 PROS2P-201ENST00000474651 1951 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC42Q96M95 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC42Q96M95 AC000374.1-201ENST00000434698 1745 ntBASIC5.6□□□□□ -1.51
CCDC42Q96M95 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC42Q96M95 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC42Q96M95 TCP1P3-201ENST00000414406 1498 ntBASIC5.59□□□□□ -1.51
CCDC42Q96M95 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC42Q96M95 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 AC026523.2-201ENST00000625039 7739 ntBASIC5.59□□□□□ -1.51
CCDC42Q96M95 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC42Q96M95 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC42Q96M95 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC42Q96M95 GABARAPL3-201ENST00000412799 354 ntBASIC5.59□□□□□ -1.51
CCDC42Q96M95 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 RPL35AP21-201ENST00000437667 333 ntBASIC5.59□□□□□ -1.51
CCDC42Q96M95 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 AC019084.1-201ENST00000457337 432 ntBASIC5.59□□□□□ -1.51
CCDC42Q96M95 RN7SL168P-201ENST00000463821 279 ntBASIC5.59□□□□□ -1.51
CCDC42Q96M95 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 HMGB1P40-201ENST00000525121 540 ntBASIC5.59□□□□□ -1.51
CCDC42Q96M95 AC010547.6-201ENST00000571789 193 ntBASIC5.59□□□□□ -1.51
CCDC42Q96M95 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC42Q96M95 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC42Q96M95 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC42Q96M95 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
CCDC42Q96M95 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC42Q96M95 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC42Q96M95 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.59□□□□□ -1.52
CCDC42Q96M95 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC42Q96M95 AC091305.2-201ENST00000624049 1576 ntBASIC5.59□□□□□ -1.52
CCDC42Q96M95 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC42Q96M95 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC42Q96M95 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC42Q96M95 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC42Q96M95 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms