Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TNIK-203ENST00000357327 3996 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC8.11□□□□□ -1.11
COL9A1P20849 PYHIN1-202ENST00000368138 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 LTBP1-207ENST00000418533 5164 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 BTBD3-202ENST00000378226 4904 ntAPPRIS P4 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 KCNK2-201ENST00000391894 1491 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 C8orf44-SGK3-201ENST00000519289 2949 ntAPPRIS P1 TSL 2 BASIC8.11□□□□□ -1.11
COL9A1P20849 ZNF655-213ENST00000425063 4624 ntTSL 3 BASIC8.11□□□□□ -1.11
COL9A1P20849 HRNR-201ENST00000368801 9623 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL9A1P20849 AC008739.5-201ENST00000623035 1938 ntBASIC8.11□□□□□ -1.11
COL9A1P20849 ADAM2-205ENST00000521880 2125 ntAPPRIS ALT2 TSL 2 BASIC8.11□□□□□ -1.11
COL9A1P20849 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
COL9A1P20849 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC8.11□□□□□ -1.11
COL9A1P20849 AMYH02020865.1-201ENST00000621140 2591 ntTSL 2 BASIC8.11□□□□□ -1.11
COL9A1P20849 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC8.11□□□□□ -1.11
COL9A1P20849 CLDN8-201ENST00000399899 2068 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
COL9A1P20849 ZMYND8-201ENST00000262975 4139 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 KIAA1217-207ENST00000396445 5706 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 LHFPL3-AS2-202ENST00000631061 1832 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 SPX-201ENST00000256969 2269 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 ERMAP-202ENST00000372514 3369 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 HERC2P5-201ENST00000562687 3825 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 CEACAM7-201ENST00000006724 2489 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 ABCC5-205ENST00000427120 4697 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 ZNF807-201ENST00000328088 1707 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 RNU1-65P-201ENST00000363919 148 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 Y_RNA.301-201ENST00000364990 103 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 RN7SKP232-201ENST00000410170 290 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 RNU2-9P-201ENST00000410194 145 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 RNU4-26P-201ENST00000410270 107 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 Y_RNA.615-201ENST00000410769 117 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC8.1□□□□□ -1.11
COL9A1P20849 RPL7AP51-201ENST00000422016 760 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 AP000997.1-201ENST00000424313 479 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC8.1□□□□□ -1.11
COL9A1P20849 FTLP17-201ENST00000432567 525 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC8.1□□□□□ -1.11
COL9A1P20849 RPSAP40-201ENST00000442343 891 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 LINC00572-201ENST00000450264 575 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 AC107399.1-201ENST00000451226 265 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC8.1□□□□□ -1.11
COL9A1P20849 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 RPL7P22-201ENST00000466005 733 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 AC015911.1-201ENST00000495111 156 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 RN7SL143P-201ENST00000496780 297 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 PSMA2P2-201ENST00000504319 686 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 LECT2-205ENST00000522943 574 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 AC122685.1-202ENST00000556750 555 ntTSL 2 BASIC8.1□□□□□ -1.11
COL9A1P20849 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC8.1□□□□□ -1.11
COL9A1P20849 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 MIR3167-201ENST00000579623 85 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 AC026898.1-201ENST00000586404 571 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 LINC01515-209ENST00000599409 755 ntTSL 5 BASIC8.1□□□□□ -1.11
COL9A1P20849 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 AL008726.1-201ENST00000607703 569 ntTSL 4 BASIC8.1□□□□□ -1.11
COL9A1P20849 AC012488.1-201ENST00000611221 640 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC8.1□□□□□ -1.11
COL9A1P20849 AC026634.1-201ENST00000634369 198 ntBASIC8.1□□□□□ -1.11
COL9A1P20849 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC8.1□□□□□ -1.11
COL9A1P20849 UBE2V2-207ENST00000523111 4373 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 TRIM5-201ENST00000380027 2290 ntTSL 5 BASIC8.1□□□□□ -1.11
COL9A1P20849 RSPO2-203ENST00000517939 2487 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 SRSF6-201ENST00000244020 4325 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC8.1□□□□□ -1.11
COL9A1P20849 LINC00933-201ENST00000557887 2606 ntTSL 2 BASIC8.1□□□□□ -1.11
COL9A1P20849 PCDH15-210ENST00000395438 5806 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
COL9A1P20849 TGM4-201ENST00000296125 3388 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL9A1P20849 ZNF331-216ENST00000511593 1985 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
COL9A1P20849 CD164-203ENST00000324953 2936 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
COL9A1P20849 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL9A1P20849 PAAF1-202ENST00000376384 1500 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 AMBN-202ENST00000449493 1512 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC8.09□□□□□ -1.11
COL9A1P20849 ZNF726-206ENST00000594466 2473 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 CU633906.2-201ENST00000624576 2257 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 CARD8-216ENST00000520153 2617 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL9A1P20849 GJA10-201ENST00000369352 1652 ntAPPRIS P2 BASIC8.09□□□□□ -1.11
COL9A1P20849 CLRN1-AS1-202ENST00000476886 2223 ntTSL 2 BASIC8.09□□□□□ -1.11
COL9A1P20849 SMAD9-203ENST00000399275 5389 ntAPPRIS ALT1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL9A1P20849 RDH11-201ENST00000381346 2588 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL9A1P20849 NVL-211ENST00000469075 2566 ntAPPRIS ALT2 TSL 2 BASIC8.09□□□□□ -1.11
COL9A1P20849 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
COL9A1P20849 STAG3L4-201ENST00000352103 530 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 RNU4-20P-201ENST00000365601 151 ntBASIC8.09□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms