Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC134882.1-201ENST00000603738 1676 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC091304.1-202ENST00000568624 3100 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 FHL5-203ENST00000541107 1904 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 LIMA1-216ENST00000552909 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 Y_RNA.88-201ENST00000363029 99 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 RNU4-12P-201ENST00000365233 139 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 RPL5P5-201ENST00000392009 893 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL360271.1-201ENST00000395679 510 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 RPL17P50-201ENST00000396131 546 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 MIR320C1-201ENST00000408566 88 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 C1D-203ENST00000409302 772 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 RN7SKP39-201ENST00000410773 322 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC245052.5-201ENST00000416320 649 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL390840.1-201ENST00000420303 988 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 USP9YP18-201ENST00000425912 695 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 RPL5P34-201ENST00000426545 891 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC122718.1-201ENST00000439448 744 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 RPS10P18-201ENST00000442662 495 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 GDI2P2-201ENST00000445131 608 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 GHRL-210ENST00000449238 440 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC022431.1-201ENST00000450941 438 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC016489.1-201ENST00000461109 375 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 FAM133DP-201ENST00000464802 691 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 TAAR3P-201ENST00000466706 1078 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL121769.1-201ENST00000469473 401 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 TAAR3P-202ENST00000481759 1025 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC066616.1-201ENST00000486795 413 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC022483.1-201ENST00000514020 567 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AP003119.2-201ENST00000528075 336 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 REG4-204ENST00000530654 612 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC087257.2-201ENST00000538759 928 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC068714.1-201ENST00000559623 800 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 MT1B-202ENST00000562399 351 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC104984.3-201ENST00000581946 546 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 LINC01837-204ENST00000593211 570 ntTSL 4 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL133338.2-201ENST00000604292 736 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 HSPE1P14-201ENST00000605812 302 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC010857.1-201ENST00000606398 594 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL355816.1-201ENST00000607951 118 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL159169.3-201ENST00000608871 561 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL121809.2-201ENST00000613169 341 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AC007014.2-201ENST00000615581 479 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL158209.2-201ENST00000619266 216 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 LINC01440-208ENST00000627300 699 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL590396.3-201ENST00000636334 300 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 HLF-210ENST00000575345 3589 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL034370.1-201ENST00000397254 1590 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 UGT2B25P-201ENST00000511504 1586 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 AL096816.1-201ENST00000623300 2920 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 LINC00683-202ENST00000579781 3510 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 CR848007.1-201ENST00000442354 1699 ntBASIC5.66□□□□□ -1.5
CCDC140Q96MF4 GNE-205ENST00000539815 3657 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC140Q96MF4 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms