Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL6A3P12111 Z92545.1-201ENST00000411782 234 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.21□□□□□ -1.58
COL6A3P12111 IGKV1OR22-5-201ENST00000458718 354 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 RN7SL132P-201ENST00000478131 296 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 AC010350.1-201ENST00000504908 231 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL6A3P12111 SCARNA20.4-201ENST00000516969 131 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 NMNAT1P1-201ENST00000554095 876 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 AL049779.3-201ENST00000557141 606 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.21□□□□□ -1.58
COL6A3P12111 MIR132-201ENST00000591554 101 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.21□□□□□ -1.58
COL6A3P12111 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A3P12111 AC025569.1-202ENST00000548687 5903 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 SP1-202ENST00000426431 7603 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A3P12111 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 GABRA1-202ENST00000393943 4686 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 FGD6-201ENST00000343958 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A3P12111 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A3P12111 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 NBAS-201ENST00000281513 7281 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
COL6A3P12111 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 AL117339.2-201ENST00000430475 180 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 RPS29P9-201ENST00000440360 171 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 RN7SKP13-201ENST00000515933 244 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 RPL21P12-201ENST00000559810 515 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 BX005214.3-202ENST00000619809 325 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 AC020978.9-201ENST00000624380 1141 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL6A3P12111 ABLIM1-206ENST00000392952 6841 ntTSL 5 BASIC5.2□□□□□ -1.58
COL6A3P12111 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.2□□□□□ -1.58
COL6A3P12111 ERG-205ENST00000398910 4954 ntTSL 5 BASIC5.2□□□□□ -1.58
COL6A3P12111 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC5.2□□□□□ -1.58
COL6A3P12111 AL359715.3-201ENST00000569267 2123 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 KIAA1671-206ENST00000637069 6510 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
COL6A3P12111 MIR372-201ENST00000362225 67 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 AC236972.1-201ENST00000433225 199 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 AL022319.1-201ENST00000458183 1167 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 UQCRHP4-201ENST00000471686 272 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 AC012400.1-201ENST00000518452 381 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
COL6A3P12111 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.2□□□□□ -1.58
COL6A3P12111 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 ZNF365-204ENST00000395251 2695 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 RNA5SP283-201ENST00000365604 119 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 AC114755.2-201ENST00000413520 361 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC5.2□□□□□ -1.58
COL6A3P12111 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC5.2□□□□□ -1.58
COL6A3P12111 STX3-208ENST00000641815 3236 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 UGT2B26P-201ENST00000508672 1613 ntBASIC5.2□□□□□ -1.58
COL6A3P12111 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 PKD1L3-201ENST00000620267 5199 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A3P12111 PBRM1-208ENST00000410007 4905 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 CLNK-201ENST00000226951 5599 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL6A3P12111 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.19□□□□□ -1.58
COL6A3P12111 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC5.19□□□□□ -1.58
COL6A3P12111 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.19□□□□□ -1.58
COL6A3P12111 AL500522.2-201ENST00000448562 343 ntBASIC5.19□□□□□ -1.58
COL6A3P12111 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.19□□□□□ -1.58
COL6A3P12111 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 ARHGEF7-203ENST00000375723 4957 ntTSL 5 BASIC5.19□□□□□ -1.58
COL6A3P12111 TRANK1-201ENST00000429976 10481 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL6A3P12111 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
COL6A3P12111 FBXL20-201ENST00000264658 10388 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.19□□□□□ -1.58
COL6A3P12111 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.19□□□□□ -1.58
COL6A3P12111 CT45A11P-201ENST00000448043 1134 ntBASIC5.19□□□□□ -1.58
COL6A3P12111 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.19□□□□□ -1.58
COL6A3P12111 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.19□□□□□ -1.58
COL6A3P12111 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.19□□□□□ -1.58
COL6A3P12111 AC008814.1-201ENST00000603797 406 ntBASIC5.19□□□□□ -1.58
COL6A3P12111 AL592148.3-201ENST00000608771 2646 ntBASIC5.19□□□□□ -1.58
COL6A3P12111 AC084757.4-201ENST00000616350 526 ntBASIC5.19□□□□□ -1.58
COL6A3P12111 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 ARHGEF11-202ENST00000368194 6889 ntAPPRIS P4 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC5.19□□□□□ -1.58
COL6A3P12111 OR9K1P-202ENST00000641111 3217 ntBASIC5.19□□□□□ -1.58
COL6A3P12111 KCNMB3-205ENST00000485523 7246 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL6A3P12111 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms