Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 AL021877.2-201ENST00000624442 10684 ntBASIC6.43□□□□□ -1.38
RNF4P78317 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
RNF4P78317 AC004014.2-201ENST00000623718 5122 ntBASIC6.43□□□□□ -1.38
RNF4P78317 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
RNF4P78317 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
RNF4P78317 AC004520.1-201ENST00000608362 1413 ntBASIC6.42□□□□□ -1.38
RNF4P78317 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.42□□□□□ -1.38
RNF4P78317 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
RNF4P78317 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 Y_RNA.248-201ENST00000364501 109 ntBASIC6.42□□□□□ -1.38
RNF4P78317 RN7SKP47-201ENST00000365347 328 ntBASIC6.42□□□□□ -1.38
RNF4P78317 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 AL136100.1-201ENST00000407696 330 ntBASIC6.42□□□□□ -1.38
RNF4P78317 MIR548F1-201ENST00000408667 84 ntBASIC6.42□□□□□ -1.38
RNF4P78317 AC019050.1-201ENST00000418508 492 ntBASIC6.42□□□□□ -1.38
RNF4P78317 RPS27AP7-201ENST00000422792 455 ntBASIC6.42□□□□□ -1.38
RNF4P78317 RPL7P44-201ENST00000424827 742 ntBASIC6.42□□□□□ -1.38
RNF4P78317 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC6.42□□□□□ -1.38
RNF4P78317 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
RNF4P78317 AC008072.1-201ENST00000434254 824 ntBASIC6.42□□□□□ -1.38
RNF4P78317 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC6.42□□□□□ -1.38
RNF4P78317 ST13P20-201ENST00000447996 1065 ntBASIC6.42□□□□□ -1.38
RNF4P78317 RFC5P1-201ENST00000454419 874 ntBASIC6.42□□□□□ -1.38
RNF4P78317 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC6.42□□□□□ -1.38
RNF4P78317 TSACC-207ENST00000470342 601 ntTSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.42□□□□□ -1.38
RNF4P78317 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 AC096751.1-202ENST00000502691 1067 ntBASIC6.42□□□□□ -1.38
RNF4P78317 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 PABPC1P1-201ENST00000506347 591 ntBASIC6.42□□□□□ -1.38
RNF4P78317 MTND2P33-201ENST00000506452 1031 ntBASIC6.42□□□□□ -1.38
RNF4P78317 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 AP001207.1-201ENST00000524051 481 ntBASIC6.42□□□□□ -1.38
RNF4P78317 AC124293.1-201ENST00000530034 493 ntBASIC6.42□□□□□ -1.38
RNF4P78317 OR4A43P-201ENST00000532938 908 ntBASIC6.42□□□□□ -1.38
RNF4P78317 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC6.42□□□□□ -1.38
RNF4P78317 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC6.42□□□□□ -1.38
RNF4P78317 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC6.42□□□□□ -1.38
RNF4P78317 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
RNF4P78317 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC6.42□□□□□ -1.38
RNF4P78317 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC6.42□□□□□ -1.38
RNF4P78317 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.42□□□□□ -1.38
RNF4P78317 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC6.42□□□□□ -1.38
RNF4P78317 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC6.42□□□□□ -1.38
RNF4P78317 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.42□□□□□ -1.38
RNF4P78317 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC6.42□□□□□ -1.38
RNF4P78317 AC111186.1-201ENST00000604684 130 ntBASIC6.42□□□□□ -1.38
RNF4P78317 AL109618.2-201ENST00000605527 211 ntBASIC6.42□□□□□ -1.38
RNF4P78317 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC6.42□□□□□ -1.38
RNF4P78317 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
RNF4P78317 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC6.42□□□□□ -1.38
RNF4P78317 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.42□□□□□ -1.38
RNF4P78317 CASC19-212ENST00000641153 1287 ntBASIC6.42□□□□□ -1.38
RNF4P78317 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.42□□□□□ -1.38
RNF4P78317 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 SPATA31C1-201ENST00000420021 3895 ntBASIC6.42□□□□□ -1.38
RNF4P78317 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
RNF4P78317 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
RNF4P78317 SLC10A5P1-201ENST00000379063 1306 ntBASIC6.42□□□□□ -1.38
RNF4P78317 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC6.42□□□□□ -1.38
RNF4P78317 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
RNF4P78317 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
RNF4P78317 AC007114.2-201ENST00000576014 4281 ntBASIC6.42□□□□□ -1.38
RNF4P78317 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 AC020978.6-201ENST00000571197 3177 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 AC104837.1-201ENST00000444644 1587 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms