Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
EPHB3P54753 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
EPHB3P54753 AL133241.1-201ENST00000556832 487 ntBASIC6.61□□□□□ -1.35
EPHB3P54753 AC092868.3-201ENST00000560515 784 ntBASIC6.61□□□□□ -1.35
EPHB3P54753 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC6.61□□□□□ -1.35
EPHB3P54753 AC234778.2-201ENST00000566241 354 ntBASIC6.61□□□□□ -1.35
EPHB3P54753 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
EPHB3P54753 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.61□□□□□ -1.35
EPHB3P54753 AC083760.1-201ENST00000589621 670 ntBASIC6.61□□□□□ -1.35
EPHB3P54753 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC6.61□□□□□ -1.35
EPHB3P54753 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.61□□□□□ -1.35
EPHB3P54753 AC024589.2-201ENST00000605642 1294 ntBASIC6.61□□□□□ -1.35
EPHB3P54753 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC6.61□□□□□ -1.35
EPHB3P54753 AL008723.3-201ENST00000608926 449 ntBASIC6.61□□□□□ -1.35
EPHB3P54753 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.61□□□□□ -1.35
EPHB3P54753 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC6.61□□□□□ -1.35
EPHB3P54753 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.61□□□□□ -1.35
EPHB3P54753 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.61□□□□□ -1.35
EPHB3P54753 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.61□□□□□ -1.35
EPHB3P54753 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
EPHB3P54753 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
EPHB3P54753 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
EPHB3P54753 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
EPHB3P54753 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
EPHB3P54753 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC6.6□□□□□ -1.35
EPHB3P54753 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC6.6□□□□□ -1.35
EPHB3P54753 NCOA4P3-201ENST00000513203 1877 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AL354854.1-201ENST00000455940 1363 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
EPHB3P54753 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.6□□□□□ -1.35
EPHB3P54753 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.6□□□□□ -1.35
EPHB3P54753 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 AL353625.1-202ENST00000366273 571 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
EPHB3P54753 OR5H15-201ENST00000383696 930 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 MIR640-201ENST00000385086 96 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AC105402.1-201ENST00000413336 545 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.6□□□□□ -1.35
EPHB3P54753 RPS7P14-201ENST00000426405 583 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC6.6□□□□□ -1.35
EPHB3P54753 GTF2IP3-201ENST00000433887 494 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 OR3D1P-201ENST00000438288 955 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC6.6□□□□□ -1.35
EPHB3P54753 PPIAP10-201ENST00000438675 458 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC6.6□□□□□ -1.35
EPHB3P54753 CUBNP2-201ENST00000443534 1139 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.6□□□□□ -1.35
EPHB3P54753 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC6.6□□□□□ -1.35
EPHB3P54753 AL133477.1-201ENST00000457472 514 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
EPHB3P54753 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC6.6□□□□□ -1.35
EPHB3P54753 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC6.6□□□□□ -1.35
EPHB3P54753 AC090958.1-201ENST00000511122 351 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 IGKV3D-25-201ENST00000519599 235 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AC020937.1-201ENST00000519677 1013 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC6.6□□□□□ -1.35
EPHB3P54753 AC084337.1-201ENST00000524809 686 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AP000619.2-201ENST00000546014 969 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AC079905.1-201ENST00000549280 475 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.6□□□□□ -1.35
EPHB3P54753 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 AC006362.1-201ENST00000567392 174 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AC008759.1-201ENST00000589783 983 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.6□□□□□ -1.35
EPHB3P54753 QTRT1P1-201ENST00000604344 1078 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 RN7SKP299-201ENST00000606679 301 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC6.6□□□□□ -1.35
EPHB3P54753 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.6□□□□□ -1.35
EPHB3P54753 RFPL4AP6-201ENST00000616792 846 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AL359314.1-201ENST00000616913 261 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AC073968.1-201ENST00000618594 637 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AL590240.3-201ENST00000621416 943 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AC129778.1-202ENST00000623812 261 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AC092656.1-203ENST00000624134 423 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AL591379.1-207ENST00000635982 261 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.6□□□□□ -1.35
EPHB3P54753 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
EPHB3P54753 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC6.6□□□□□ -1.35
EPHB3P54753 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
EPHB3P54753 CASC19-281ENST00000642118 1554 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
EPHB3P54753 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
EPHB3P54753 MTCO1P28-201ENST00000574177 1528 ntBASIC6.6□□□□□ -1.35
EPHB3P54753 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms