Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 DMBT1-207ENST00000619379 7686 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 ZNF317-202ENST00000360385 3955 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 ATG13-207ENST00000526508 4199 ntTSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 GLDN-202ENST00000396399 4584 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 LRP2BP-201ENST00000328559 5157 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 SYNE1-206ENST00000367253 5189 ntTSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 WISP3-202ENST00000361714 2512 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 Y_RNA.307-201ENST00000365022 117 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 SET-203ENST00000372688 801 ntTSL 2 BASIC8.16□□□□□ -1.1
COL9A1P20849 ERCC6-202ENST00000374127 1782 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 Y_RNA.574-201ENST00000384766 95 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 IGHV2-5-201ENST00000390597 378 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
COL9A1P20849 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 HMGB3P1-201ENST00000393368 573 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 MRPL42P3-201ENST00000401492 326 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 RNU6ATAC23P-201ENST00000408448 123 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC8.16□□□□□ -1.1
COL9A1P20849 AC073264.1-201ENST00000411508 416 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 AC008267.5-201ENST00000424928 265 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 CCDC113-202ENST00000443128 5110 ntTSL 2 BASIC8.16□□□□□ -1.1
COL9A1P20849 AL031681.1-201ENST00000443304 400 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC8.16□□□□□ -1.1
COL9A1P20849 AL512504.2-201ENST00000445455 1909 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC8.16□□□□□ -1.1
COL9A1P20849 EEF1B2P3-201ENST00000447718 678 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 ST13P21-201ENST00000453250 1098 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 AC118758.1-202ENST00000454719 225 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 TNR-IT1-201ENST00000455447 630 ntTSL 3 BASIC8.16□□□□□ -1.1
COL9A1P20849 AC013429.1-201ENST00000456604 422 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 HGF-209ENST00000457544 2249 ntAPPRIS ALT1 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 NF1P3-201ENST00000457709 450 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 CTSLP6-201ENST00000458273 1002 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 RN7SL502P-201ENST00000481857 290 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 OR9A3P-202ENST00000485185 878 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 AC116353.1-201ENST00000489727 316 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 AC114324.1-201ENST00000504077 3152 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 AC111193.1-201ENST00000504097 155 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC8.16□□□□□ -1.1
COL9A1P20849 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC8.16□□□□□ -1.1
COL9A1P20849 BTG4P1-201ENST00000510421 183 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 IGSF22-205ENST00000513874 4284 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 AC105031.1-201ENST00000518550 476 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 TRIM51EP-201ENST00000524374 1516 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 SLC22A10-203ENST00000526800 699 ntTSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC8.16□□□□□ -1.1
COL9A1P20849 THAP2-202ENST00000547843 672 ntTSL 2 BASIC8.16□□□□□ -1.1
COL9A1P20849 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC8.16□□□□□ -1.1
COL9A1P20849 AC003985.2-201ENST00000562268 1669 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 AL845331.3-201ENST00000562821 2028 ntTSL 2 BASIC8.16□□□□□ -1.1
COL9A1P20849 AC007495.1-202ENST00000565155 559 ntTSL 2 BASIC8.16□□□□□ -1.1
COL9A1P20849 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
COL9A1P20849 LINC01198-208ENST00000599175 560 ntTSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 AP004247.3-201ENST00000608682 624 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC8.16□□□□□ -1.1
COL9A1P20849 AC007485.2-201ENST00000623493 1667 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 ACTR3BP2-202ENST00000623630 1338 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC8.16□□□□□ -1.1
COL9A1P20849 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 PRRG1-208ENST00000542554 4600 ntAPPRIS P1 TSL 4 BASIC8.16□□□□□ -1.1
COL9A1P20849 DNAH9-203ENST00000454412 13452 ntTSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 ATP1A2-202ENST00000392233 3338 ntTSL 5 BASIC8.16□□□□□ -1.1
COL9A1P20849 BBS12-201ENST00000314218 3244 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 PEG3-201ENST00000326441 8723 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 VIT-203ENST00000389975 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 SLC22A24-203ENST00000612278 2101 ntAPPRIS P2 TSL 5 BASIC8.15□□□□□ -1.1
COL9A1P20849 SCOC-AS1-201ENST00000512692 1987 ntTSL 2 BASIC8.15□□□□□ -1.1
COL9A1P20849 GFRAL-201ENST00000340465 1911 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 AURKA-204ENST00000395907 1902 ntTSL 3 BASIC8.15□□□□□ -1.1
COL9A1P20849 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 NLRP14-201ENST00000299481 3628 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
COL9A1P20849 CUBNP1-201ENST00000412710 1790 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 ELP2-203ENST00000358232 8459 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 PFKM-203ENST00000359794 3228 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 MYH2-201ENST00000245503 6339 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 MMP13-202ENST00000340273 1470 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 AC012618.3-205ENST00000637896 1496 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 NUTM1-203ENST00000537011 4102 ntAPPRIS ALT2 TSL 2 BASIC8.15□□□□□ -1.1
COL9A1P20849 ABLIM1-206ENST00000392952 6841 ntTSL 5 BASIC8.15□□□□□ -1.1
COL9A1P20849 TKTL2-201ENST00000280605 2654 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
COL9A1P20849 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 OR11H5P-202ENST00000641612 1325 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 MIR135B-201ENST00000362189 97 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 AL034403.1-201ENST00000399414 885 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC8.15□□□□□ -1.1
COL9A1P20849 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC8.15□□□□□ -1.1
COL9A1P20849 RN7SKP247-201ENST00000411094 308 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 RPL12P27-201ENST00000414870 496 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 AC127526.1-201ENST00000417526 366 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC8.15□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms