Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
COL6A3P12111 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
COL6A3P12111 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.28□□□□□ -1.56
COL6A3P12111 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.28□□□□□ -1.56
COL6A3P12111 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC5.28□□□□□ -1.56
COL6A3P12111 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.28□□□□□ -1.56
COL6A3P12111 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
COL6A3P12111 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
COL6A3P12111 CBFA2T2-203ENST00000346541 7737 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL6A3P12111 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC5.27□□□□□ -1.57
COL6A3P12111 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 MIR491-201ENST00000384877 84 ntBASIC5.27□□□□□ -1.57
COL6A3P12111 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.27□□□□□ -1.57
COL6A3P12111 AL354714.3-201ENST00000447284 493 ntBASIC5.27□□□□□ -1.57
COL6A3P12111 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.27□□□□□ -1.57
COL6A3P12111 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.27□□□□□ -1.57
COL6A3P12111 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
COL6A3P12111 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.27□□□□□ -1.57
COL6A3P12111 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.27□□□□□ -1.57
COL6A3P12111 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC5.27□□□□□ -1.57
COL6A3P12111 MBP-206ENST00000397863 4800 ntTSL 3 BASIC5.27□□□□□ -1.57
COL6A3P12111 FNDC3A-206ENST00000541916 6328 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 AL021331.1-201ENST00000402817 582 ntBASIC5.27□□□□□ -1.57
COL6A3P12111 RRM2P4-201ENST00000441721 562 ntBASIC5.27□□□□□ -1.57
COL6A3P12111 AC079804.1-201ENST00000461922 436 ntBASIC5.27□□□□□ -1.57
COL6A3P12111 AC022133.1-201ENST00000490961 571 ntBASIC5.27□□□□□ -1.57
COL6A3P12111 RPS12P31-201ENST00000491419 398 ntBASIC5.27□□□□□ -1.57
COL6A3P12111 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.27□□□□□ -1.57
COL6A3P12111 MIR2116-201ENST00000517221 80 ntBASIC5.27□□□□□ -1.57
COL6A3P12111 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.27□□□□□ -1.57
COL6A3P12111 AL138960.1-201ENST00000613838 513 ntBASIC5.27□□□□□ -1.57
COL6A3P12111 AC005899.7-201ENST00000618199 588 ntBASIC5.27□□□□□ -1.57
COL6A3P12111 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.27□□□□□ -1.57
COL6A3P12111 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.27□□□□□ -1.57
COL6A3P12111 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
COL6A3P12111 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
COL6A3P12111 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 RASSF2-202ENST00000379400 5427 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
COL6A3P12111 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
COL6A3P12111 TRPM7-207ENST00000560955 7218 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL6A3P12111 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.27□□□□□ -1.57
COL6A3P12111 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.26□□□□□ -1.57
COL6A3P12111 RNA5SP119-201ENST00000362715 117 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 RPS26P8-201ENST00000393490 348 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 AL132765.1-201ENST00000434165 553 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 OR5D2P-201ENST00000524390 911 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 OR11H3P-201ENST00000554547 982 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 AP005205.1-201ENST00000563503 508 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 RN7SL176P-201ENST00000580352 264 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.26□□□□□ -1.57
COL6A3P12111 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.26□□□□□ -1.57
COL6A3P12111 AC135068.5-201ENST00000624197 983 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.26□□□□□ -1.57
COL6A3P12111 NRP1-206ENST00000374867 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
COL6A3P12111 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 SAMMSON-210ENST00000641260 1308 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 AL391261.1-201ENST00000555712 1479 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 THAP12P9-201ENST00000503971 2360 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A3P12111 AMOTL1-203ENST00000433060 8970 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 ATP9A-201ENST00000311637 7437 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 RNA5SP397-201ENST00000391323 118 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 AL022722.2-201ENST00000402519 180 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 PPIAP31-201ENST00000405422 495 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 KRR1P1-201ENST00000419430 803 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.26□□□□□ -1.57
COL6A3P12111 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
COL6A3P12111 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.26□□□□□ -1.57
COL6A3P12111 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
COL6A3P12111 SCAF11-202ENST00000369367 7543 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
COL6A3P12111 DNAH11-212ENST00000620169 13670 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
COL6A3P12111 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A3P12111 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A3P12111 ZEB2-236ENST00000636471 9583 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A3P12111 AC015977.1-201ENST00000418887 292 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A3P12111 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.26□□□□□ -1.57
COL6A3P12111 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A3P12111 AC091390.2-201ENST00000432573 374 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms