Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 FNDC3A-206ENST00000541916 6328 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 BX510359.2-201ENST00000417920 305 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 RPS29P9-201ENST00000440360 171 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 RNU1-88P-201ENST00000459274 128 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AC105129.1-201ENST00000560250 297 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AC114781.5-201ENST00000615297 108 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AC002044.3-201ENST00000623314 541 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 ERG-205ENST00000398910 4954 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 GPR155-203ENST00000392552 6730 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 RNA5SP251-201ENST00000410614 137 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AL732292.1-201ENST00000426692 226 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC106806.2-201ENST00000509365 500 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 PEG10-206ENST00000612941 6392 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 PEG10-209ENST00000617526 6392 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC018628.1-201ENST00000624147 3819 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC015799.1-201ENST00000622996 3122 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 RNA5SP317-201ENST00000410176 116 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 RNA5SP311-201ENST00000411290 116 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 Z95327.1-201ENST00000446082 482 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 OR1H1P-201ENST00000448731 937 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 SNORA59A-201ENST00000459326 152 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 RNA5SP315-201ENST00000516340 116 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 RNA5SP312-201ENST00000517068 116 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC012339.2-201ENST00000523996 453 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC106785.1-201ENST00000565935 262 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AC034229.5-201ENST00000624258 185 ntBASIC5.03□□□□□ -1.6
VPS13AQ96RL7 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 ZEB2-246ENST00000638128 8932 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS13AQ96RL7 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AL139039.2-201ENST00000407436 479 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 SNORA77-201ENST00000408716 125 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 CBX1P1-201ENST00000440184 427 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 PHBP16-201ENST00000446318 950 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 SCARNA22-201ENST00000503991 125 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AP000619.2-201ENST00000546014 969 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AC073091.2-201ENST00000603205 907 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AL445567.2-201ENST00000618935 498 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AP000547.3-204ENST00000588548 2523 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AC025569.1-202ENST00000548687 5903 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 OR52J1P-201ENST00000450596 932 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 ATP5LP5-201ENST00000483050 299 ntBASIC5.02□□□□□ -1.61
VPS13AQ96RL7 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC5.02□□□□□ -1.61
VPS13AQ96RL7 SOX5P1-201ENST00000524155 1127 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms