Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HLA-DMBP28068 NENFP3-201ENST00000503735 313 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 CSNK1A1P3-201ENST00000504105 330 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
HLA-DMBP28068 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 DPPA2P4-201ENST00000563717 878 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 DPRXP4-201ENST00000578053 568 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 AP005403.1-201ENST00000579720 229 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 AP000769.2-201ENST00000602344 396 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 AL034374.2-201ENST00000605281 548 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 RN7SL787P-201ENST00000613000 284 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 AL162574.1-201ENST00000615702 950 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 MIR193BHG-214ENST00000641765 509 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HLA-DMBP28068 AC112198.2-201ENST00000426589 6996 ntBASIC4.19□□□□□ -1.74
HLA-DMBP28068 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HLA-DMBP28068 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HLA-DMBP28068 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
HLA-DMBP28068 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
HLA-DMBP28068 SRRM1P3-201ENST00000426911 2678 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 TCP1P3-201ENST00000414406 1498 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC116158.1-201ENST00000560231 2129 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 CASC19-248ENST00000641674 1356 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AL078621.3-201ENST00000623707 2042 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 SNORD56.6-201ENST00000384569 71 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 PPIAP9-201ENST00000403866 498 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AL445213.1-201ENST00000412589 747 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 OR2AT2P-201ENST00000413438 905 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 SDHDP6-201ENST00000414693 480 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 RPL34P3-201ENST00000421454 338 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AP000547.1-201ENST00000454360 617 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 RPS17P15-201ENST00000475609 349 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 RN7SL717P-201ENST00000478343 297 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 EIF3LP3-201ENST00000495197 822 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 RNU6-513P-201ENST00000516104 104 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 SEPT10P1-201ENST00000517342 1162 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 MRPS16P1-201ENST00000523462 412 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 HMGB1P42-201ENST00000532126 553 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 OR8G3P-201ENST00000533406 921 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC027544.3-201ENST00000535082 757 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC135626.1-201ENST00000556983 435 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC009237.13-201ENST00000603193 276 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC108738.1-201ENST00000603703 237 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AC092944.2-201ENST00000605443 889 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HLA-DMBP28068 AP005432.1-201ENST00000580891 3485 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 AL353796.1-201ENST00000561542 3241 ntBASIC4.18□□□□□ -1.74
HLA-DMBP28068 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC4.18□□□□□ -1.74
HLA-DMBP28068 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms