Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MRPS33P2-201ENST00000507850 322 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AC074255.1-201ENST00000511259 501 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AL356317.1-201ENST00000396110 1436 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AC005225.5-201ENST00000623547 2225 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 RNU6ATAC18P-201ENST00000408413 101 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 RN7SKP279-201ENST00000411383 298 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AL450023.1-201ENST00000450868 751 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 RAB28P2-201ENST00000454299 641 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 RN7SL51P-201ENST00000468230 285 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 RPS3AP15-201ENST00000483874 781 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 LINC01739-205ENST00000641890 573 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 EEF1A1P33-201ENST00000554413 1362 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 SSX3-202ENST00000376893 800 ntTSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 MIR223-201ENST00000385204 110 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 RPS16P5-201ENST00000406501 404 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 MYL6P5-201ENST00000412707 459 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AC006335.2-201ENST00000437993 330 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CT45A11P-201ENST00000448043 1134 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 IGHV1-14-201ENST00000523391 241 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CASC22-201ENST00000569713 386 ntTSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AL132640.3-201ENST00000630473 177 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CASC19-260ENST00000641828 2001 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 NPM1P36-201ENST00000415681 835 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CYP4F27P-201ENST00000514557 494 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AC078878.1-201ENST00000539832 958 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 ZNF107-204ENST00000423627 5773 ntTSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 RBMY1HP-201ENST00000382759 1389 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 IGHVIII-76-1-201ENST00000523776 286 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 OR56A7P-201ENST00000524865 941 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AC087783.2-201ENST00000605070 562 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AP000346.3-201ENST00000622821 210 ntBASIC1.68□□□□□ -2.14
SYNE1Q8NF91 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC1.68□□□□□ -2.14
SYNE1Q8NF91 NIFKP3-201ENST00000417799 865 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms