Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHA3Q9Y5H8 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
PCDHA3Q9Y5H8 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
PCDHA3Q9Y5H8 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHA3Q9Y5H8 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
PCDHA3Q9Y5H8 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHA3Q9Y5H8 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHA3Q9Y5H8 TFP1-202ENST00000475455 1573 ntBASIC20.51■□□□□ 0.87
PCDHA3Q9Y5H8 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.51■□□□□ 0.87
PCDHA3Q9Y5H8 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 AF201337.1-201ENST00000520239 748 ntBASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 AC105036.2-201ENST00000569468 176 ntBASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
PCDHA3Q9Y5H8 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 LINC01465-201ENST00000408887 1940 ntBASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 MIR935-201ENST00000401179 91 ntBASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 BX276092.2-201ENST00000417668 665 ntBASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHA3Q9Y5H8 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 AC093503.3-201ENST00000624917 2352 ntBASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
PCDHA3Q9Y5H8 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 AC073210.2-201ENST00000430369 194 ntBASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 IKBKGP1-201ENST00000612193 1073 ntBASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PCDHA3Q9Y5H8 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 AC005829.2-201ENST00000571422 1056 ntBASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 RAP2CP1-201ENST00000605103 478 ntBASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
PCDHA3Q9Y5H8 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms