Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 KRT16P2-201ENST00000414673 1423 ntBASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 AC233992.3-201ENST00000607491 485 ntBASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COMMD3Q9UBI1 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 OR2A1-AS1-204ENST00000470435 602 ntBASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COMMD3Q9UBI1 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 GRAMD4P7-201ENST00000578182 1232 ntBASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 AC120498.10-201ENST00000621827 505 ntBASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
COMMD3Q9UBI1 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms