Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF41Q9H4P4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 MME-217ENST00000616757 1315 ntTSL 5 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
RNF41Q9H4P4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 AL135905.2-201ENST00000584934 1404 ntBASIC23.16■■□□□ 1.3
RNF41Q9H4P4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 USP36-216ENST00000589424 970 ntTSL 5 BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 AC073130.3-201ENST00000624389 2278 ntBASIC23.16■■□□□ 1.3
RNF41Q9H4P4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF41Q9H4P4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 HTR7P1-201ENST00000538670 1336 ntBASIC23.15■■□□□ 1.3
RNF41Q9H4P4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 AL353807.1-201ENST00000427475 662 ntBASIC23.15■■□□□ 1.3
RNF41Q9H4P4 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 NME1-207ENST00000480143 964 ntTSL 2 BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 C1QL1P1-201ENST00000568105 661 ntBASIC23.15■■□□□ 1.3
RNF41Q9H4P4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 KRT8P8-201ENST00000434750 1448 ntBASIC23.15■■□□□ 1.3
RNF41Q9H4P4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF41Q9H4P4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
RNF41Q9H4P4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC23.14■■□□□ 1.3
RNF41Q9H4P4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC23.14■■□□□ 1.3
RNF41Q9H4P4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF41Q9H4P4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF41Q9H4P4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF41Q9H4P4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF41Q9H4P4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RNF41Q9H4P4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
RNF41Q9H4P4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RNF41Q9H4P4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC23.14■■□□□ 1.29
RNF41Q9H4P4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF41Q9H4P4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC23.14■■□□□ 1.29
RNF41Q9H4P4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms