Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL12A1Q99715 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL12A1Q99715 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL12A1Q99715 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL12A1Q99715 AF228730.7-201ENST00000641842 219 ntBASIC17.24■□□□□ 0.35
COL12A1Q99715 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL12A1Q99715 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.24■□□□□ 0.35
COL12A1Q99715 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL12A1Q99715 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL12A1Q99715 KRT18P1-202ENST00000452408 1331 ntBASIC17.23■□□□□ 0.35
COL12A1Q99715 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.23■□□□□ 0.35
COL12A1Q99715 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.23■□□□□ 0.35
COL12A1Q99715 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.23■□□□□ 0.35
COL12A1Q99715 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL12A1Q99715 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL12A1Q99715 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.23■□□□□ 0.35
COL12A1Q99715 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL12A1Q99715 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL12A1Q99715 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL12A1Q99715 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL12A1Q99715 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL12A1Q99715 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.23■□□□□ 0.35
COL12A1Q99715 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL12A1Q99715 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.23■□□□□ 0.35
COL12A1Q99715 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL12A1Q99715 KRT8P8-201ENST00000434750 1448 ntBASIC17.23■□□□□ 0.35
COL12A1Q99715 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
COL12A1Q99715 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.22■□□□□ 0.35
COL12A1Q99715 AL139424.1-201ENST00000607572 797 ntBASIC17.22■□□□□ 0.35
COL12A1Q99715 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL12A1Q99715 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
COL12A1Q99715 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL12A1Q99715 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
COL12A1Q99715 AP002383.4-201ENST00000442518 975 ntBASIC17.22■□□□□ 0.35
COL12A1Q99715 AC027796.2-201ENST00000575326 344 ntBASIC17.22■□□□□ 0.35
COL12A1Q99715 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.22■□□□□ 0.35
COL12A1Q99715 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.22■□□□□ 0.35
COL12A1Q99715 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL12A1Q99715 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
COL12A1Q99715 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.22■□□□□ 0.35
COL12A1Q99715 ZNF444P1-201ENST00000559497 298 ntBASIC17.22■□□□□ 0.35
COL12A1Q99715 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
COL12A1Q99715 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
COL12A1Q99715 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL12A1Q99715 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.21■□□□□ 0.35
COL12A1Q99715 AC004980.1-204ENST00000429707 299 ntBASIC17.21■□□□□ 0.35
COL12A1Q99715 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL12A1Q99715 SLC25A1P1-201ENST00000528351 927 ntBASIC17.21■□□□□ 0.35
COL12A1Q99715 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.21■□□□□ 0.35
COL12A1Q99715 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
COL12A1Q99715 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
COL12A1Q99715 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL12A1Q99715 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL12A1Q99715 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL12A1Q99715 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL12A1Q99715 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.21■□□□□ 0.35
COL12A1Q99715 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.21■□□□□ 0.35
COL12A1Q99715 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
COL12A1Q99715 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL12A1Q99715 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL12A1Q99715 AC004870.1-201ENST00000315132 882 ntBASIC17.2■□□□□ 0.34
COL12A1Q99715 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL12A1Q99715 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
COL12A1Q99715 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.2■□□□□ 0.34
COL12A1Q99715 AC092865.5-201ENST00000545435 363 ntBASIC17.2■□□□□ 0.34
COL12A1Q99715 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.2■□□□□ 0.34
COL12A1Q99715 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL12A1Q99715 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL12A1Q99715 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC17.2■□□□□ 0.34
COL12A1Q99715 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.2■□□□□ 0.34
COL12A1Q99715 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.2■□□□□ 0.34
COL12A1Q99715 SPDYE15P-201ENST00000424157 909 ntBASIC17.2■□□□□ 0.34
COL12A1Q99715 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.2■□□□□ 0.34
COL12A1Q99715 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
COL12A1Q99715 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.2■□□□□ 0.34
COL12A1Q99715 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.2■□□□□ 0.34
COL12A1Q99715 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.2■□□□□ 0.34
COL12A1Q99715 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL12A1Q99715 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.19■□□□□ 0.34
COL12A1Q99715 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL12A1Q99715 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
COL12A1Q99715 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL12A1Q99715 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
COL12A1Q99715 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.19■□□□□ 0.34
COL12A1Q99715 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL12A1Q99715 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.19■□□□□ 0.34
COL12A1Q99715 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.19■□□□□ 0.34
COL12A1Q99715 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
COL12A1Q99715 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
COL12A1Q99715 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms