Protein–RNA interactions for Protein: Q96HC4

PDLIM5, PDZ and LIM domain protein 5, humanhuman

Known RBP Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5Q96HC4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 HLA-L-209ENST00000420110 1011 ntBASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 UNC93B4-201ENST00000505679 747 ntBASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 SOX15-203ENST00000570788 1093 ntBASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM5Q96HC4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 YBX1P10-201ENST00000444752 975 ntBASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 AP006587.1-201ENST00000534129 1502 ntBASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 BX323043.1-201ENST00000641006 1765 ntBASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM5Q96HC4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 ID1-201ENST00000376105 1233 ntBASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 UNC93B5-201ENST00000530315 699 ntBASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.17■□□□□ 0.66
PDLIM5Q96HC4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 AL355802.2-201ENST00000402069 882 ntBASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 AL032819.2-201ENST00000624543 2162 ntBASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.16■□□□□ 0.66
PDLIM5Q96HC4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM5Q96HC4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
PDLIM5Q96HC4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM5Q96HC4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM5Q96HC4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM5Q96HC4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.15■□□□□ 0.66
PDLIM5Q96HC4 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM5Q96HC4 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms