Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
SKA1Q96BD8 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.12■□□□□ 0.81
SKA1Q96BD8 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.12■□□□□ 0.81
SKA1Q96BD8 MTDHP1-201ENST00000605323 784 ntBASIC20.12■□□□□ 0.81
SKA1Q96BD8 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SKA1Q96BD8 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SKA1Q96BD8 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SKA1Q96BD8 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SKA1Q96BD8 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SKA1Q96BD8 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SKA1Q96BD8 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SKA1Q96BD8 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SKA1Q96BD8 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SKA1Q96BD8 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SKA1Q96BD8 AC133681.1-201ENST00000465482 601 ntBASIC20.11■□□□□ 0.81
SKA1Q96BD8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 PRKY-204ENST00000533551 1019 ntBASIC20.11■□□□□ 0.81
SKA1Q96BD8 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SKA1Q96BD8 AIRN-201ENST00000601203 4374 ntBASIC20.11■□□□□ 0.81
SKA1Q96BD8 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.11■□□□□ 0.81
SKA1Q96BD8 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 AC110285.5-201ENST00000611501 352 ntBASIC20.1■□□□□ 0.81
SKA1Q96BD8 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.1■□□□□ 0.81
SKA1Q96BD8 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SKA1Q96BD8 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 AC006557.6-201ENST00000623071 864 ntBASIC20.09■□□□□ 0.81
SKA1Q96BD8 AL023875.1-201ENST00000640777 796 ntBASIC20.09■□□□□ 0.81
SKA1Q96BD8 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.09■□□□□ 0.81
SKA1Q96BD8 AL158211.5-201ENST00000623583 2518 ntBASIC20.09■□□□□ 0.81
SKA1Q96BD8 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SKA1Q96BD8 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SKA1Q96BD8 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SKA1Q96BD8 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.81
SKA1Q96BD8 AC011484.1-201ENST00000377652 1995 ntBASIC20.08■□□□□ 0.81
SKA1Q96BD8 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SKA1Q96BD8 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SKA1Q96BD8 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SKA1Q96BD8 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.08■□□□□ 0.81
SKA1Q96BD8 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SKA1Q96BD8 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SKA1Q96BD8 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SKA1Q96BD8 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SKA1Q96BD8 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms