Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC25.64■■□□□ 1.7
RTF1Q92541 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
RTF1Q92541 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.69
RTF1Q92541 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
RTF1Q92541 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
RTF1Q92541 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
RTF1Q92541 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
RTF1Q92541 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTF1Q92541 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC25.63■■□□□ 1.69
RTF1Q92541 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTF1Q92541 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTF1Q92541 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC25.63■■□□□ 1.69
RTF1Q92541 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
RTF1Q92541 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTF1Q92541 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC25.63■■□□□ 1.69
RTF1Q92541 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTF1Q92541 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC25.63■■□□□ 1.69
RTF1Q92541 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
RTF1Q92541 PPP1R14BP5-201ENST00000440334 435 ntBASIC25.63■■□□□ 1.69
RTF1Q92541 RBM17P1-201ENST00000453646 1190 ntBASIC25.63■■□□□ 1.69
RTF1Q92541 AC116562.2-201ENST00000507042 360 ntBASIC25.63■■□□□ 1.69
RTF1Q92541 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC25.63■■□□□ 1.69
RTF1Q92541 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC25.63■■□□□ 1.69
RTF1Q92541 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTF1Q92541 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTF1Q92541 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTF1Q92541 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC25.63■■□□□ 1.69
RTF1Q92541 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC25.62■■□□□ 1.69
RTF1Q92541 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC25.62■■□□□ 1.69
RTF1Q92541 AC133561.5-201ENST00000635547 218 ntBASIC25.62■■□□□ 1.69
RTF1Q92541 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTF1Q92541 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
RTF1Q92541 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 LINC01006-201ENST00000333319 2292 ntBASIC25.61■■□□□ 1.69
RTF1Q92541 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC25.61■■□□□ 1.69
RTF1Q92541 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 MMP23A-201ENST00000234610 1017 ntBASIC25.61■■□□□ 1.69
RTF1Q92541 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
RTF1Q92541 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
RTF1Q92541 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTF1Q92541 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
RTF1Q92541 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
RTF1Q92541 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
RTF1Q92541 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
RTF1Q92541 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
RTF1Q92541 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC25.6■■□□□ 1.69
RTF1Q92541 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
RTF1Q92541 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC25.6■■□□□ 1.69
RTF1Q92541 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
RTF1Q92541 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC25.6■■□□□ 1.69
RTF1Q92541 AC131212.4-201ENST00000623606 975 ntBASIC25.6■■□□□ 1.69
RTF1Q92541 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC25.6■■□□□ 1.69
RTF1Q92541 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
RTF1Q92541 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
RTF1Q92541 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RTF1Q92541 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RTF1Q92541 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
RTF1Q92541 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC25.59■■□□□ 1.69
RTF1Q92541 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC25.59■■□□□ 1.69
RTF1Q92541 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
RTF1Q92541 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC25.59■■□□□ 1.69
RTF1Q92541 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
RTF1Q92541 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
RTF1Q92541 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
RTF1Q92541 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC25.59■■□□□ 1.69
RTF1Q92541 AC026271.3-201ENST00000571884 352 ntBASIC25.59■■□□□ 1.69
RTF1Q92541 AP000525.1-201ENST00000608286 694 ntBASIC25.59■■□□□ 1.69
RTF1Q92541 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC25.59■■□□□ 1.69
RTF1Q92541 ABBA01031674.1-201ENST00000635145 728 ntBASIC25.59■■□□□ 1.69
RTF1Q92541 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
RTF1Q92541 KRT8P8-201ENST00000434750 1448 ntBASIC25.59■■□□□ 1.69
RTF1Q92541 AC079598.2-202ENST00000546624 1451 ntBASIC25.59■■□□□ 1.69
RTF1Q92541 AC099778.1-201ENST00000568593 1911 ntBASIC25.59■■□□□ 1.69
RTF1Q92541 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
RTF1Q92541 AL157384.1-201ENST00000445995 2473 ntBASIC25.58■■□□□ 1.69
RTF1Q92541 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
RTF1Q92541 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC25.58■■□□□ 1.69
RTF1Q92541 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
RTF1Q92541 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms