Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HMGB4Q8WW32 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 RCC2P6-201ENST00000526625 1557 ntBASIC19.71■□□□□ 0.75
HMGB4Q8WW32 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 INGX-201ENST00000359239 846 ntBASIC19.71■□□□□ 0.75
HMGB4Q8WW32 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.71■□□□□ 0.75
HMGB4Q8WW32 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGB4Q8WW32 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 AC026310.3-201ENST00000625186 2373 ntBASIC19.7■□□□□ 0.74
HMGB4Q8WW32 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 AC130371.2-201ENST00000619443 611 ntBASIC19.7■□□□□ 0.74
HMGB4Q8WW32 HLA-A-209ENST00000638375 975 ntBASIC19.7■□□□□ 0.74
HMGB4Q8WW32 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGB4Q8WW32 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.69■□□□□ 0.74
HMGB4Q8WW32 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 FAM87A-204ENST00000613235 858 ntBASIC19.69■□□□□ 0.74
HMGB4Q8WW32 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HMGB4Q8WW32 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 AC004951.3-201ENST00000418645 1148 ntBASIC19.68■□□□□ 0.74
HMGB4Q8WW32 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 AP000692.2-201ENST00000608391 879 ntBASIC19.68■□□□□ 0.74
HMGB4Q8WW32 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB4Q8WW32 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms