Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.57■□□□□ 0.4
H3F3AP84243 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
H3F3AP84243 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
H3F3AP84243 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
H3F3AP84243 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.57■□□□□ 0.4
H3F3AP84243 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.57■□□□□ 0.4
H3F3AP84243 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
H3F3AP84243 AFG3L1P-217ENST00000557444 2447 ntBASIC17.57■□□□□ 0.4
H3F3AP84243 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
H3F3AP84243 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
H3F3AP84243 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
H3F3AP84243 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.56■□□□□ 0.4
H3F3AP84243 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
H3F3AP84243 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
H3F3AP84243 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.56■□□□□ 0.4
H3F3AP84243 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
H3F3AP84243 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.56■□□□□ 0.4
H3F3AP84243 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.56■□□□□ 0.4
H3F3AP84243 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
H3F3AP84243 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 YBX1P10-201ENST00000444752 975 ntBASIC17.56■□□□□ 0.4
H3F3AP84243 AC133681.1-201ENST00000465482 601 ntBASIC17.56■□□□□ 0.4
H3F3AP84243 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.56■□□□□ 0.4
H3F3AP84243 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
H3F3AP84243 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
H3F3AP84243 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
H3F3AP84243 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
H3F3AP84243 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
H3F3AP84243 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
H3F3AP84243 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
H3F3AP84243 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
H3F3AP84243 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
H3F3AP84243 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
H3F3AP84243 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.55■□□□□ 0.4
H3F3AP84243 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.55■□□□□ 0.4
H3F3AP84243 KRT18P29-201ENST00000397031 1267 ntBASIC17.55■□□□□ 0.4
H3F3AP84243 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.55■□□□□ 0.4
H3F3AP84243 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.55■□□□□ 0.4
H3F3AP84243 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.55■□□□□ 0.4
H3F3AP84243 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
H3F3AP84243 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.55■□□□□ 0.4
H3F3AP84243 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
H3F3AP84243 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
H3F3AP84243 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.55■□□□□ 0.4
H3F3AP84243 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.55■□□□□ 0.4
H3F3AP84243 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
H3F3AP84243 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
H3F3AP84243 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
H3F3AP84243 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
H3F3AP84243 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
H3F3AP84243 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.55■□□□□ 0.4
H3F3AP84243 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.54■□□□□ 0.4
H3F3AP84243 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
H3F3AP84243 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.54■□□□□ 0.4
H3F3AP84243 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 PRORSD1P-201ENST00000295112 541 ntBASIC17.54■□□□□ 0.4
H3F3AP84243 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.54■□□□□ 0.4
H3F3AP84243 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.54■□□□□ 0.4
H3F3AP84243 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.54■□□□□ 0.4
H3F3AP84243 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.54■□□□□ 0.4
H3F3AP84243 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.54■□□□□ 0.4
H3F3AP84243 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.54■□□□□ 0.4
H3F3AP84243 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.54■□□□□ 0.4
H3F3AP84243 AC124016.1-201ENST00000609552 612 ntBASIC17.54■□□□□ 0.4
H3F3AP84243 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
H3F3AP84243 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.54■□□□□ 0.4
H3F3AP84243 AL023875.1-201ENST00000640777 796 ntBASIC17.54■□□□□ 0.4
H3F3AP84243 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
H3F3AP84243 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
H3F3AP84243 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
H3F3AP84243 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.54■□□□□ 0.4
H3F3AP84243 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
H3F3AP84243 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.54■□□□□ 0.4
H3F3AP84243 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
H3F3AP84243 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms